Oenanthe melanoleuca (Eastern black-eared wheatear): 130263870
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Entry
130263870 CDS
T09236
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03013
Nucleocytoplasmic transport
oma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130263870 (CASC3)
03015 mRNA surveillance pathway
130263870 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130263870 (CASC3)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130263870 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
130263870
NCBI-ProteinID:
XP_056367707
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All DBs
Position
27:complement(3790007..3801298)
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AA seq
728 aa
AA seq
DB search
MADRRRQRASQDSEDSEGSAASDSAASAPGSPRSARSRSGSGSRSRSRSRSRSGSPRLPH
RPPRGAAGALGAGPRSRGAESAAGAGGKSAAESECESEDGIEGDAVLSDYESAEDSEVEE
EDYSEEESSKVELKQDSNDSCESAARGEKGNEKVDPKGAVTGERQSGDGQESTEPVEKKV
GKKVPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDK
FREDEQAPKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPPKPP
RHQGAKSPSAPPRSFNSRSSASAGRMPPARNYPRMGGYKETRPGYRASEATVPHRNGEQA
KQESGYRGKRAEQSPSRDTSPELEVAHVHGSPGKEEGALENQATAADAAQPPPDRPVEKK
SYSRARRTRVKAGEAGKLAEEVPASEGLAPVIPKPTAAETSPPPAKSSWESPVESSVDGL
EQEMTQMNLTEQNWSPGQSQFIPPRELRGIPNHMHVGTGPPPQFNRMEEMAVQGGRVKRY
SSQRQRPPVPEPAPPMHISIVEGHYYDPLQFQGPIYTHGENPAPLPPQGMIVQPEMHLPH
PGLHPHQTPPAMANPGLYPPPVSMPPGQPPPQQLLTPTYFSAPGVMNFGNPGYPYPPGAL
PPPPPPHLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEVVSRAP
VNLSYLNL
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacagcgagggctcggcg
gcctctgacagcgctgcctccgcgcccggctccccccgctccgcccgctcccgctcgggc
tccggatcccgctcccggtcccgctcccggtcccggtccggctcgccccgcctgccgcac
cgcccgccgcgcggcgccgccggggccctcggtgccgggccgcggagccgcggggccgag
agcgccgctggggcgggggggaagagcgcggccgagtcggagtgtgaaagtgaggatggc
atcgaaggagatgccgtgctctctgactatgaaagcgccgaggactcggaggtagaggaa
gaggattacagcgaggaagaaagctccaaggtggagctgaagcaggacagcaacgattcc
tgcgagtcggcggccagaggggagaaggggaatgagaaggtggatcccaagggagccgtg
acgggcgagcggcagagcggggacgggcaggagagcacggagcctgtggagaagaaagtt
ggcaagaaggttcccaagcacctggacgacgatgaggatcggaagaacccggcgtacatc
ccgcgcaaggggctcttctttgagcatgacctccgagggcagacgcaggaggaggaggtc
aggccaaagggtcgtcagcggaagctgtggaaggacgaggggcgctgggaacacgacaag
ttccgtgaggatgagcaggcccccaagaccaggcaggagctgatagctttgtatggatac
gacatccgctctgcccacaaccccgacgacatcaaaccccggaggatgcgcaagccacgc
tttggcagtccccctcagcgagaccctaactggtcaaatgagaggccccccaagcccccg
aggcaccagggtgccaagagcccctcggctcccccacggtccttcaacagccgcagctct
gccagcgctggcaggatgccccctgccaggaactacccaaggatggggggctacaaggag
acccgtccaggctaccgggcttcagaggcgactgtgccacaccggaacggggagcaagcc
aagcaggagagcggctaccgcgggaagcgtgcagagcagagcccgtcaagggacacgtcc
cctgagctggaggtggcacatgtccatggcagccctgggaaggaggagggggctctggaa
aaccaagccacggctgctgacgctgcgcagccgccgccggacagaccagtggagaagaaa
tcttattcccgggcaagaaggaccagagtcaaggctggggaggcagggaagctggcagag
gaagtgcctgcttctgaggggctggctcctgtgattccaaaacccacagcagctgagacc
tcccccccgccagccaagagcagctgggagtcaccggtggaatccagcgtggatggactt
gagcaggagatgacccagatgaacctgacagagcagaactggagcccggggcagtcccag
ttcatcccgcctcgggagctgaggggtattcccaaccatatgcacgtgggaactgggcca
ccgccgcagtttaaccggatggaggagatggcagtgcaggggggccgtgtcaagcgctac
tcatcacagcggcagagaccccccgtgccagagcccgcgccccccatgcacatcagcatt
gtggaaggacactactacgacccattacaattccagggaccaatctacacccacggtgag
aacccagccccgctgccgccccaagggatgattgtgcagccggagatgcacctccctcat
ccaggtttacacccccaccagacgccccctgccatggcaaaccccggcctgtacccccca
ccagtgtccatgcccccgggccagcccccgccgcagcagctgctcactccgacttacttc
tcggcccctggagtgatgaattttgggaatcctggctacccctacccccctggagctctg
ccccctccgccccctcctcatctctattccaacacgcaggcgcagtcccaggtctatggg
ggggtcacctactacaacactgtccagcagcaggtgcagcccaagccctccccgccccgc
cggacgtcccagcctgtgaccatcaaaccaccccctccagaggtggtaagcagggctcca
gttaatttgagttacttaaatctttaa
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