Oenanthe melanoleuca (Eastern black-eared wheatear): 130264603
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Entry
130264603 CDS
T09236
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03013
Nucleocytoplasmic transport
oma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130264603 (UPF1)
03015 mRNA surveillance pathway
130264603 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130264603 (UPF1)
Enzymes [BR:
oma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130264603 (UPF1)
5.6.2.5 RNA 5'-3' helicase
130264603 (UPF1)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130264603 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
130264603 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130264603
NCBI-ProteinID:
XP_056368888
LinkDB
All DBs
Position
28:complement(4382446..4416187)
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPPQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKAGRG
GRQKNRFGIPGSSQANLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgcggacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagaccccgcccgggccgggccaggcggggccgccgcagggccagggc
ccccccggagcggggcagggagctccgggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctggca
gagctcaactttgaggaggatgaggaggacacttactacaccaaggacctgcctgtgcac
gcctgcagttactgtgggatccatgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtgggaacacctctggcagccacattgtgaatcacctggtg
agagccaagtgcaaggaggtgaccctgcacaaggacgggcccctgggagagacggtcctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatccctgccaaggct
gactccgtggtggtgctgctgtgcaggcagccatgtgccagccagagcagcttgaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctctcgtgg
ctggtgaagattccctcggagcaggagcagctccgcgcccgccagatcacagcccagcag
atcaacaagctggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatctttggtcctctggtcaagcttgaggcagattatgacaaaaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcagggagatgag
atctgcctgaggtacaagggagacctggcccctctctggaaaggaattgggcacgtgatc
aaagttcctgacagttctacagattatggtgatgaaatcgccatcgagctgaggagcagc
gtgggagcccctgtggaggtcacccacaacttccaggtggattttgtgtggaaatccact
tcctttgacaggatgcagagtgctctgaaaacatttgcagtggatgagacctcagtgtct
gggtacatttaccacaaactgctggggcatgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacagcccagggcctccctgacctcaaccactctcaggtttatgct
gtcaagaccgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagcaacatcgccgtggatcagctgacagagaagatccaccagaccggc
ctcaaggtggttcgtctgtgtgccaagagccgcgaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctacag
cagctcaaggatgagactggagaactttcctctgctgatgagaagagataccgggcactg
aagcgcacggcggagcgggagctgctcatgaatgcagatgtgatctgctgtacctgtgtg
ggtgctggggatccccgcctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtgctgggggccaagcagctgatc
ctggtgggtgaccactgccagctggggcccgtggtgatgtgcaagaaggcggccaaggcg
gggctgtcgcagtcgctgttcgagcgcctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgag
ggctcgctgcagaacggcgtcactgcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggccaggaggagattgcc
agctcaggcacctcctacctcaacaggactgaagctgccaacgtggagaagatcaccacc
aagctgctgaaggctggggccaagcccgaccagatcggcatcatcaccccctacgagggc
cagcgctcctacctggtgcagtacatgcagttcagtggctccctgcacaccaagctctac
caggaggtggaaattgccagtgtggatgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtgagggccaacgagcaccagggcattggcttcctcaacgaccccaggagg
ctgaacgtggccctgaccagagccaggtatggggtgatcattgtggggaaccccaaagcc
ctgtccaagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctg
gtggagggacccctgaacaacctgagggagagcctgatgcagttcagcaaaccccgcaag
ctggtgaacaccatcaaccctggagccaggttcatgaccacggccatgtacgacgcgcgc
gaggccatcatccccggctccgtctacgaccgcagcagccaaggccgcccatccaacatg
tacttccagacccacgaccagatcgggatgatcagcgccgggcccagccacgtcaccgcc
atgaacatccccatccccttcaacctggtcatgccccccatgccccccccgggctacttc
ggccaggccaacggcccagctgcaggccgtggggctcccaaaggcaaagccgggcgcggc
gggcggcagaaaaaccgatttgggatccctggcagcagccaggccaacctgcccaacagc
caggccagccaggacgtggtgtcccagcccttctcccagggccccctgacacagggctac
atctccatgagccagccctcccagatgagccagcctgggctctcccagccagaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgagcttatcaacatggtggagtgacggggctgtcacagtat
tag
DBGET
integrated database retrieval system
