Oenanthe melanoleuca (Eastern black-eared wheatear): 130264826
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Entry
130264826 CDS
T09236
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oma03016
]
130264826 (RTCB)
Enzymes [BR:
oma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
130264826 (RTCB)
Transfer RNA biogenesis [BR:
oma03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130264826 (RTCB)
Prokaryotic type
tRNA splicing ligases
130264826 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
130264826
NCBI-ProteinID:
XP_056369348
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All DBs
Position
1A:complement(19916351..19926714)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcgtgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcaggg
ggcttcttgcctgctatgaagcagattgggaatgtggctgcattgcctggcattgttcac
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcggctttgacatc
aactgcggtgtccgcctgctgcggacaaatttggatgaaagtgacgtgcagcctgtgaaa
gagcagctcgcccaggctatgtttgaccacattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactggagatgggtgtggattggtctctc
cgggagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgcta
caggctgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggg
accctgggagctggaaatcattacgccgagatccaggtggtggatgagatttacaacgaa
tatgctgccaagaaaatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagagggctgggccaccaggttgccacagatgcgctggtggctatggaaaaagcc
atgaaacgggacaaaatcatagtgaatgatcgccagctggcgtgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggcctttgccaaagtcttcaacacaacccca
gacgaccttgacatgcatgttatctacgatgtgtctcacaacattgccaaagtggaacag
cacgtggtggatggaaaggagcgcactctgctggtgcacaggaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgtagattatcaactgactggacagcctgttctg
attggtggcacaatgggcacctgtagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggacgtactggacaagctggctgacatgggcattgccatccgt
gttgcttcccccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtggttaacacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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