Oenanthe melanoleuca (Eastern black-eared wheatear): 130265128
Help
Entry
130265128 CDS
T09236
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oma03041
]
130265128
Enzymes [BR:
oma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130265128
Spliceosome [BR:
oma03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130265128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
AAA_19
Ank_2
nSTAND3
AAA_22
ATPase
HA2_N
PhoH
Ank_4
AAA_23
ResIII
Ank
UvrD-helicase
AAA_16
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
130265128
NCBI-ProteinID:
XP_056369931
LinkDB
All DBs
Position
Z:17034199..17061871
Genome browser
AA seq
1424 aa
AA seq
DB search
MSRHRRVPRRQPSGAAGGSAASAAVRARAEALREVAVDEEVEMAVQLALERFRSGDEAEM
EFPSSFTSTERAYVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSELTHAVMTCDLALRTK
HAVRSLIQSFPVTNKERTELLPRTERGNACAVESENKEVNKTSGRLNDGIPQIPVKRGES
EFDAFRQSLPVLEKQEEIVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGTPCRVF
CTQPRRLAAVAVAERVAAERKEKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGD
STLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQTNLKLIISSAALDANLFIRYFGSCP
VIHIQGRAFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEQQKSTLAEWCSAQENTHKL
ASRRQKSVPRANEEYKWLDDGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDIWLHKDIDS
FAQVFHLILTENVSVDYRHSETGATALMISAGRGFLSQVEQLISMGASIHCKSSNGWMAV
DWARRFGQTEVIDLLESYSASFGFGNLDESSLVQKSGSDLSAEDRELLTAYHHSFDDEKV
DLDLIMHLLHSICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNANRYQVFLLHSS
VQTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSRVTMLK
MGWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQCPELLRMPLQEICLYTKLLA
PTNCPIVDFLMRAPDPPPAVTVRNAVHMLKTIDAMDPWEGLTELGYHLTELPVEPHLGKM
VLYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAF
QAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTN
SENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYKKIAPANGQA
AAIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVALFCGPARLPSNALQASSSFRGGG
ASNDSSDSEMEDKTTANLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKP
WSQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSKKNSTE
TELSDSSNAEKVSVKSTSPALHQPKKYKEKDILLAKRSADDRSAQSSVKPADNSPCASPS
SPVSAKGCKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNGAFWESSM
VYLIFSVQGSGCFQGFARMDSAIGCEKSQDWGSAGFGGVFKVDWIRKEIIPFQFAHHLLN
PWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKKLTEHAK
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgggtgccgcggcggcagcccagcggggccgcggggggctcggct
gcctccgccgcggtgcgcgcccgggccgaggccctcagggaggtcgccgtggacgaggag
gtggagatggcggtgcagctcgccctggagcggttccggagcggggacgaggcggagatg
gaatttccttctagtttcactagtactgaaagagcatatgttcatcggctctgtcagtct
cttggactggtgtctaaaagcaaaggaaaaggagccaatcgatacctgactgtaaggaag
aaggatgtatcagaactgacacatgcagttatgacttgtgatttggctctccgtacgaaa
catgctgttcggagtctaattcagagctttcctgtcacaaataaggaaagaacagaactc
ctgccaaggacagagcgaggaaatgcttgtgctgttgaatctgaaaacaaagaagtgaac
aagacaagtggtcgacttaatgatggcattccccagatcccagtgaaaagaggggaatca
gagtttgatgccttcaggcaatcactgccagttcttgaaaaacaggaagaaattgtccaa
ataataaaggacaataaaattgttttgattataggagagactggatcaggaaaaactact
caaattcctcagtttattcttgatgactgctacaagaatggaactccctgtcgtgtgttt
tgtactcagccaagacgtttagcagctgttgctgtggctgaaagagtggcagcagaaaga
aaagagaagattggccagacaattggttaccagatccgcttagaaagcagggtttctcca
aagacactggtaacattctgcactaatgacatgctccttcgcacgctgatggcaggagac
agcaccctctccactgtgacccatgttattgtggatgaagtacatgagagggataggttc
agcgacttcctgctaataaaactgagagatgtgctgcaaaaccagactaatttaaaatta
attatttctagtgctgctctagatgcaaatctctttattaggtattttggaagctgccca
gtaatacatattcaaggaagagcttttgaagttaaagagatgtttctggaggacatttta
cgaagcactgggtatacaaacaaagagatggtaaagtacaaaaaagagaagcagcaagaa
gagcagcagaagagcactcttgctgagtggtgttccgctcaagaaaacactcacaaactg
gcatctcggaggcaaaaatcggttccaagggcaaatgaagagtacaagtggctggatgat
ggtggtgacacagtatttaatcaacttactgagaaagatgtgaattgccttgaaccgtgg
atagtaaaagaaatggattcctgtctttctgacatctggttgcataaagatattgattcc
tttgctcaggtgttccatcttattttaactgaaaatgtcagtgttgattataggcacagt
gaaaccggtgcaactgctctgatgatttctgcagggagaggctttttgagtcaagtagaa
cagttgatcagcatgggagcaagtatccactgcaaatcatccaatggctggatggctgtg
gactgggctaggcgttttggacagactgaggttattgatctgttggaatcctacagtgcc
tcattcggatttggaaatctggatgaaagttccctagtccaaaaaagtggtagtgacctt
agtgcagaggacagagaactactgacagcttatcatcacagttttgatgatgaaaaagtg
gatctggatctgataatgcacttacttcacagcatctgtcatagctgtgatgcaggagca
attttaatatttcttcctggatatgatgagatagtgagcctgagggaccgcattcttttt
gatgacaaaagatttgctgataatgctaacagataccaagttttcttgcttcattcgagt
gtgcagactttggatcagaagaaagtgcttgaaactccaccttctggcatccgcaaaatt
attctttctactaatattgcggaaacaagcataactgttaatgatgttgtgtttgtcatt
gactcaggcaaggtgaaagagaagtcttttgatgcactgagtcgtgttacaatgctaaaa
atggggtggatttcaaaagccagtgctatccagagaaaaggaagggctgggcgctgtcag
cctggagtctgttttcgtctcttcagcagactccgatttcagaatatgttggaatttcaa
tgtccagaacttctaagaatgccacttcaggagatttgtttgtacacaaaacttctggct
ccaactaattgtccaattgtagacttccttatgagagctcctgatcctccacctgctgta
actgtgagaaatgctgtgcatatgcttaagaccatagatgccatggacccttgggaaggt
ctcactgagcttggttatcatctcactgaattacctgtagagccacatcttggtaaaatg
gtgttgtatgctgtggttctgaagtgcctggatcctgttctgaccattgcctgtgctctt
gcctgccaagacccttttgtgctgcccacgctggcctcccaaaagcgtgcagccatgctg
tgcaggaaacgttttgctgcagggacgttcagtgaccacatggccctgctcagggctttc
caggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaacttc
ctatcccaagccacaatggaaatcattgtaggaatgagaacacagttgcttggccagctt
agagcctcaggttttgtgagagccagaggaggagctgatattagagatgtcaacactaac
tctgagaactgggctgtaattaaagctgccttagtggccgggatgtatcccaatcttgtg
catgtagacagggaaagcctggttttgaccgaaccaaaggagaagaaagtgcgatttcat
cctacctctgttcttggtcaatctcagtataaaaagattgccccagcaaatggacaagct
gcagccatccaggccctccctacagactggcttatatatgatgaaatgacaagagctcac
aagacagcaaacatcaggtgctgctcagttgtgacacctgtcaccgtggccctcttctgt
ggaccagccagactgccaagtaatgccttgcaggcatcttcatcctttcgagggggaggg
gcatctaatgatagcagtgacagtgagatggaggacaaaacaactgctaatctggctcta
ctgaagctggatgaatggctccatctcaaactggaccctgaagctgctggtatgctgttg
caactgaggcaaaagtggcacagtttgttcctgcgtcgtatgcgagctccttctaaaccg
tggtctcaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaa
cagtctgcaggtctgcagcagccttcaggaattggccagagaccaagacctgtgacttgt
gaagaacttcctttggcatctacgtggaagtcaaccaacagcaaaaaaaactcaacagaa
accgaattgtctgactcttctaatgctgaaaaggtttcagtgaaatctacatctcctgca
ctccaccagccaaagaagtacaaagaaaaagacattttgctagccaaacgatctgcagat
gacagatcagctcagtcctcagtgaagcctgcagacaacagcccctgtgctagtccttct
tctccagtatctgcaaagggttgcaagtctccttcaccaagacaaaacatgccagttcgg
tactttataatgaaaagcagcaacttgcaaaacattgatatttctcaacagaagggaata
tggtccactacaccaagtaatgaacgaaaactgaatggagctttttgggagagcagcatg
gtttacttaatattttctgttcaagggtctggatgctttcagggctttgctagaatggat
tcagctatcgggtgtgagaaaagtcaagactggggatctgctggttttggaggtgtattt
aaggttgactggatccgaaaagaaatcattccttttcagtttgcacaccatttgctcaac
ccatggaacgacagtaagaaagtacagataagtagagatggccaggagctggaaccacaa
gttggagagcagttgctgcagctttgggaccgtattcctttggcaggaaaaaaactgact
gagcatgccaagtaa
DBGET
integrated database retrieval system
