KEGG   Oenanthe melanoleuca (Eastern black-eared wheatear): 130265835
Entry
130265835         CDS       T09236                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
oma  Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04510  Focal adhesion
oma04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:oma00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130265835 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130265835 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:oma00536]
    130265835 (COL2A1)
Glycosaminoglycan binding proteins [BR:oma00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130265835 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 130265835
NCBI-ProteinID: XP_056371123
LinkDB
Position
LGE22:complement(1029469..1050880)
AA seq 1506 aa
MPGHRPAPGGHRSEPAATGPGAAPRPGLLLLLLLLCLAAAAAAQDRDLPEAGSCLQDGHR
YSDKDVWKPEPCQICVCDTGTVLCDEIICEEMRDCPSPEIPFGECCPICPTEQPSGQPGP
KGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPG
PPGPPGPPGPPGLGGGNFAAQMAVGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQ
GFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTP
GLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAA
GARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSP
GPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA
GFKGEQGPKGEMGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQD
GLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAP
GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAA
GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGER
GFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIA
GPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAP
GERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVT
GPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRA
GDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS
GEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGET
GPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGEA
GEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMP
GPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRA
DEAAPGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGDYWID
PNQGCTLDAIKVFCNMATGETCVYPSPSSIPRKNWWSSKAKEKKHVWFGESINGGFHFSY
GAEELAPNTANIQMTFLRLLSSEGSQNLTYHCRNSVAYLDGDSGSLRKALLIQGSNDVEI
RAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDL
GPVCFL
NT seq 4521 nt   +upstreamnt  +downstreamnt
atgcccggacaccgcccggcccccggcggccaccgctccgagcccgcagccaccggcccc
ggagccgccccccggcccgggctcctgctcctcctcctcctcctctgcctcgccgccgcc
gccgccgcgcaggaccgagacctccccgaggctggcagctgcctgcaggacgggcaccgc
tacagcgacaaggacgtgtggaagccggagccgtgccagatctgcgtgtgcgacacgggg
acggtgctgtgcgacgaaatcatctgcgaggagatgcgggactgccccagccccgagatc
cccttcggagagtgctgccccatttgccccaccgagcagcccagcggacagcccggcccc
aagggacagaaaggtgaacccggtgacatcaaagatgtcgtaggaccccgaggacccccg
ggcccgcagggccccgcaggtgagcagggacagcgaggggaccgcggcgagaagggtgag
aagggcgcccccggcccgcggggcagggatggggaacccggaaccccaggaaatcccggc
ccccccgggccccccggacccccgggaccccccggcctggggggcgggaacttcgcggct
cagatggccgtaggcttcgacgagaaggctggaggggctcagatgggcgtcatgcaggga
cccatgggccccatgggaccccgcggcccccccggcccctccggctcccccggtccccaa
ggattccaaggcaaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccc
cgggggcctccgggacctcctggaaaacccggtgacgacggcgagaccggcaaacccggg
aaatctggcgagcgcggcccccccggcccccagggcgctcgaggcttccccgggaccccc
ggcctgcctggagtcaaaggccaccggggctaccccggcctggacggcgccaagggagag
gcgggagcacctggagccaagggcgagtccggctccccgggcgagaacggctcccccggg
cccatgggtccccgcgggctgcccggagagcgaggacgcccgggcccctcgggcgctgcg
ggcgctcgtggcaatgacggcctccccggcccggcgggaccccctggtcccgtcggcccc
gcaggagcccccggcttccccggcgcccccggctccaagggtgaagcgggtcccaccgga
gcgcgaggacccgagggtgcccaggggccccgtggagaatccgggacccccggctcgccc
ggccccgccggcgcccccggaaaccccggtaccgacggcatccccggagcgaagggatcg
gcgggcgctcccggcatcgcgggcgctccaggattccccggcccccgcggcccgcccgga
ccccagggagccaccggcccgctgggccccaagggacagacgggcgagcccggcatcgcg
ggattcaaaggcgagcagggacccaagggagagatgggccctgcaggaccccaaggcgcc
cccggaccggctggagaggaagggaagagaggagcccgtggagaacccggagctgccgga
cccttgggaccacctggagagaggggcgctcctggcaaccgcggcttccccgggcaggac
gggctggccggccccaagggggccccgggcgagcgcggccccgctggcctggccggcccc
aaaggagccaccggcgaccccggacgccccggagagcccggcctgcctggagccaggggt
ctcacaggccgccccggggacgctgggccccaaggcaaagtcggccccacaggtgcccct
ggtgaggatggacgccctggaccccccggcccccagggggctcggggccagcctggcgtt
atggggttccctggtcccaaaggtgccaatggtgagcctggaaaagccggtgagaaagga
cttcctggagcaccagggctgaggggacttcctggcaaggacggagagaccggagctgcc
ggacccccaggacccgccggcccggcaggagagaggggagagcaaggagcccccggcccc
tccggcttccaggggctgccagggccaccaggtccccccggtgagagcggcaaacccgga
gatcagggtgttcctggagaagctggagctcccgggcttgtgggtcccaggggcgagcgc
ggcttccccggcgagcgcggctctccgggcgcccagggcctgcaggggccccgcgggctc
cccggcacccccggcaccgacggacccaagggcgccaccggccccgccggccccaacggc
gcccagggacccccggggctgcaggggatgcccggcgagagaggagccgccggcatcgcc
ggccccaagggggacaggggagacgtcggagagaagggacccgagggagcccccggaaag
gacggagctcgcggtctgactggtcccatcggcccccccggccccgctggccccaacggt
gagaagggcgagtctggtccccccggcccgtccggagccgccggtgcccgcggtgcccct
ggagagcgcggagagcccggagcccccggccctgccggatttgctggacccccgggcgct
gatggccagcccggagccaagggcgaacagggggagccaggccagaagggcgatgccgga
gcccccgggcctcagggtccctctggggctcctgggccacagggtcccactggtgtcacc
ggtcccaaaggagctcggggcgctcagggacccccgggagccaccggattccctggagca
gccggacgcgtcggaccccctggccccaacggtaaccccggccccccggggccccccggc
tccgcgggcaaggacggccccaagggcgcccggggcgacgcgggacccccgggccgagcg
ggggacccggggctgcagggccccgctggcccccccggcgagaagggcgagcctggcgag
gacggccccgcgggtccggacggtccccccggtccccaggggctggcagggcagcgcggc
atcgtggggctgccggggcagcgcggcgagcgcggattcccggggctgcccggaccctcg
ggagagcctggaaaacagggagcacctggatctgccggtgaccggggaccccccgggccc
gtgggacccccggggctgacgggaccggctggagagcctggcagagagggaaatcccggc
tctgacggacccccgggcagggatggggcggccggagtgaagggcgatcgtggcgagacc
ggccccgtgggcgctcccggcgctcccggcgctcctggcgcccccggccccgtgggaccc
accggaaaacagggagacagaggagagacgggtgctcagggtcccatgggtccctccggc
cctgctggcgctcgggggatgccgggtccccaggggccacgcggtgacaaaggcgaggcg
ggcgaggcgggcgagcgcggcctgaagggtcaccggggcttcaccgggctccaggggctg
cccgggccacccggtccttctggagaccagggcgctgccgggcctgcgggcccctccggg
cccaggggtccccccggccccgtgggcccctcgggcaaggacggctccaatgggatgccc
ggacccatcggcccccctggaccccgtgggaggagcggcgagcccggcccggcgggcccc
cccgggaaccccggcccgcccggcccccccgggccccccggcaccggtatcgacatgtcg
gcgttcgcggggctggggcagcccgagaagggccccgaccccgggcgctacatgcgggcg
gacgaggcggcgccggggctgcggccgcacgacgccgaggtggacgccacgctcaaggcc
ctcaacaaccagatcgagagcatccgcagccccgagggctcccgcaagaacccggccagg
acctgccgagacatcaaactctgccaccccgactggaagagcggtgattactggatcgac
cccaaccagggctgcaccctggacgccatcaaagtcttctgcaacatggccacgggggag
acgtgtgtgtaccccagccccagcagcatccccaggaagaactggtggagcagcaaagcc
aaggagaagaagcacgtctggttcggcgagagcatcaacggcggcttccacttcagctac
ggcgctgaggagctggcgcccaacacggccaacatccagatgacgttcctgcggctgctg
tccagcgagggctcgcagaacctcacctaccactgccgcaacagcgtggcctacctggac
ggcgactcgggcagcctgaggaaggcgctgctcatccagggctccaacgacgtcgagatc
cgcgccgagggcaacagcaggttcacctacagcgtgctggaggacggctgcacgaaacac
accgggaagtggggcaggactgtcatcgagtaccgctcccagaagacctcgcgcctgccc
atcgtggacattgcacctatggacattggggggcccgagcaggagtttggggtggacctc
ggccccgtctgcttcttgtaa

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