Oenanthe melanoleuca (Eastern black-eared wheatear): 130265924
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Entry
130265924 CDS
T09236
Symbol
SMARCD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130265924 (SMARCD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oma03021
]
130265924 (SMARCD1)
03036 Chromosome and associated proteins [BR:
oma03036
]
130265924 (SMARCD1)
Transcription machinery [BR:
oma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130265924 (SMARCD1)
Chromosome and associated proteins [BR:
oma03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130265924 (SMARCD1)
PBAF complex
130265924 (SMARCD1)
GBAF(ncBAF) complex
130265924 (SMARCD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
130265924
NCBI-ProteinID:
XP_056371243
LinkDB
All DBs
Position
LGE22:1142942..1149533
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AA seq
511 aa
AA seq
DB search
MAARAGFQSGPASGAGAGAAPGAALGPGTPGGAVRMGPAPGQGLYRSPLPGAAYPRPGML
PGGRLAPQGPAMGPPGYGGSPAVRPALAQAGLEQARKRPAPQQLQQVQPQAVPNRNHNAK
KKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRI
FISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIEL
DKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARL
LGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHAL
LMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKI
HETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQ
PWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggccgggttccagtcggggcctgcgagcggcgccggcgccggggccgcg
ccaggagccgcgctgggcccgggaacgccgggcggggcggtgcgcatgggcccggcgccg
gggcagggcctgtatcgctcgccgctgcccggagccgcctacccgcggcccgggatgctg
ccgggcggccgcctggcgccgcagggcccggccatggggcctcccggctacggcgggagc
cccgcggtgcggcccgcgctggcgcaggccgggctggagcaggctcgcaagcggccggcg
ccgcagcagctccagcaggtgcagccgcaggcggtgcccaaccgcaaccacaatgccaag
aagaagaagatggcagataaaatcctcccgcagcggatccgggagctggtgcctgaatcc
caggcctacatggacttgttggcctttgagaggaagctggaccagaccatcatgaggaaa
cgcctggatatccaggaggctctgaaacgccccatcaagcaaaagcgaaagctgcggatt
tttatctccaacaccttcaacccagccaagtcggacgcggaggacggagaaggaaccgtc
gcctcctgggagctgcgggtggaaggacggctgctggaggattctgctctgtccaaatat
gatgccaccaagcagaaaaggaaattttcgtccttctttaaatctctggtcattgaactt
gataaagacctgtatggccctgacaatcacctagtagagtggcacaggactgctacgact
caggagacagatgggttccaggtgaagaggccgggggatgtcaacgtgcgctgcactgtc
ctgctgatgctggattaccagcctccccagttcaaactggatccacgcctggctcggctc
ctgggcatccacacccagacccggcccgtgatcatccaggccctgtggcagtacatcaag
acccacaagctgcaggacccccacgagcgggagtttgtcatctgtgacaagtacctgcag
cagatattcgagtcgcagcggatgaagttctctgaaatcccacaaaggcttcatgccttg
ctgatgcccccagagcccatcatcatcaatcatgtgatcagtgttgacccaaatgaccag
aagaaaacagcctgctatgacattgatgtggaggtggacgataccctgaaaactcagatg
aattcctttctgctctccacagccagtcaacaggaaattgctgctctggataacaagatc
cacgaaacaattgagaccatcaaccagctgaagacacagcgggagttcatgctgagcttt
gcccgagatcctcagggcttcatcaacgactggctccagtcccagtgccgggatttgaag
acaatgactgatgtggttgggaatcccgaggaggagcgcagagccgagttctacttccag
ccgtgggcgcaggaagccgtgtgccggtacttctactccaaggtgcagcagagacggcag
gagctggagcaggcgctggggatccggaacacataa
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