Onychostoma macrolepis: 131520434
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Entry
131520434 CDS
T09350
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
omc
Onychostoma macrolepis
Pathway
omc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131520434 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omc03041
]
131520434 (prpf8)
Spliceosome [BR:
omc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131520434 (prpf8)
Complex C
U5 SnRNP specific factors
131520434 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
131520434
NCBI-ProteinID:
XP_058600652
LinkDB
All DBs
Position
15:complement(18684577..18698264)
Genome browser
AA seq
2342 aa
AA seq
DB search
MAAAFPYRGVPGTMPPGVPPPPPAVAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGF
VDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQI
RDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE
PPLDYADNILDVEPLEAIQMELDPEEDSSVAEWLYEHQPLKDSTKYVNGTTYRRWQFTLP
MMSTLYRLANQLLTDLVDKNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDW
NEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHYVHLTWYHTPNVVFIKTEDPDLPAFYFD
PLINPISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNL
RSGRTRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLF
RSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTK
ERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYR
YKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLG
NLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHL
SESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCK
KNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYK
HDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKE
VGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVY
KWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKN
NVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLS
FQDTPTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKC
WPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFE
CRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGS
TTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP
VVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQ
PWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYD
KGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGT
YFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQV
QLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKET
IHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDS
HDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGGKPLIQQAMAKI
MKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKT
FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLP
VEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQ
MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTD
EEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQT
KEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVS
SDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGT
HQTVHLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTII
ITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMV
PGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDM
YA
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccctacagaggtgttcctggaacaatgcctccaggtgttcctcca
cctcctcctgctgttgctccagtaccagattacatgactgaggagaaactgcaagagaaa
gctcggaaatggcagcagcttcaggccaaacgctactcagagaagaggaaatttggcttt
gtggatgctcagaaagaggacatgccacctgagcatgtgcgcaaaatcatcagggatcat
ggtgacatgacgaacaggaaatttcggcatgacaagagggtttaccttggggccctgaaa
tatatgccccatgcagtgctcaaacttctggagaacatgcccatgccctgggagcagatc
agagatgttcctgtgctctaccacattacaggcgctatttcctttgtaaatgaaatccca
tgggtgattgagccggtgtacattgctcagtggggcacgatgtggatcatgatgcgtcgt
gagaagcgagacagacggcacttcaagcgcatgcgtttccctccatttgatgatgaagag
cctccgttggattatgcggacaacatcctggatgttgagcctctggaggcgatccagatg
gagctggaccctgaggaggactcttctgttgcagaatggctttatgagcatcaacctctg
aaagattccacaaaatatgtgaacgggaccacatacagacgctggcaattcactttacca
atgatgtccactctgtatcgattggctaatcagttgctgacagacttggtggataaaaac
tacttctacttgtttgacttgaaggctttctttacctctaaagcgttgaacatggccatt
ccagggggacccaaatttgagccgcttgtcagagacattaatctccaggatgaagactgg
aatgagttcaatgacatcaacaagatcatcatcagacaaccaatcaggacggaatacaaa
attgcattcccttacctatacaacaacctgccacactatgtgcacctcacctggtaccac
acaccaaacgtggtgtttatcaagactgaggatcctgatctgcccgccttctactttgac
cctctgatcaaccccatctctcacaggcactccgtcaagagccaagagcctctgccagag
gatgatgaggagtttgaactgcctgagtatgttgagccattcctgaaggagacgcctctc
tacactgacaacacagccaatggaattgcgctgttgtgggcacctcgtccattcaatctc
cgctcaggaagaaccagacgggccattgatgtgcctctcatcaaaaactggtatcgtgag
cattgtcctgcaggccagcctgtgaaggtgcgtgtgtcttaccagaagctgctgaagtac
tatgtgctgaatgctctaaaacacagaccacctaaagcacagaaaaagagatacctgttc
cgctctttcaaagccaccaaattcttccagtccacaaagctggattgggtagaagttggc
ctccaggtgtgccggcagggctacaacatgctgaacctgctgattcacagaaagaacctc
aactacctgcacttggactacaacttcaacttgaagcctgtgaaaaccctcaccacaaag
gaacgtaagaagtccagattcgggaatgctttccacttgtgccgtgaggttctgcgtttg
agcaagcttgtggtggacagtcatgtgcagtacaggcttggaaacgttgacgctttccag
ctgtcagatggactgcagtacatcttcgcccatgttggtcaattgactggcatgtaccgc
tacaagtacaagctcatgaggcagatcagaatgtgcaaagacctgaagcatctcatctac
taccgcttcaacacaggcccagttggaaaaggtccaggctgtgggttctgggctccaggg
tggagagtctggctgttcttcatgagaggcatcactcctcttctagagcggtggcttggc
aatcttctggccaggcagtttgagggtcgacactccaagggtgttgcaaagactgtgacc
aaacagcgtgtggaatctcactttgatctggagctgagagctgctgtgatgcatgacatc
ctggatatgatgcctgagggtatcaagcagaacaaggccagaaccatcttgcagcatctg
agcgagtcatggagatgctggaaggccaacatcccttggaaggttcctgggcttccaacc
cccattgagaacatgattctccgctatgtgaaggccaaagctgactggtggaccaacaca
gcccactacaaccgtgagagaatccgaagaggagccactgtggataagactgtgtgcaag
aaaaacctgggacgtctcactcgactctatctaaaggcagagcaggagagacagcacaat
tacctgaaggatggaccttacatcacagctgaggaggccgtggccatctacaccaccaca
gtgcactggctggagagtcgtcgtttctctccgatccccttccctcctctgtcttacaaa
catgacactaagctgctcatcttggctttggagagactcaaggaggcttacagtgtgaag
tcaaggctgaaccagtcacagcgtgaggagttgggtctgattgagcaggcctatgacaac
cctcatgaggctttgtccagaatcaaacgtcacctcctcactcagagagccttcaaagag
gtgggcattgagttcatggacctttacagtcacttggtgccggtttatgatgttgaacct
ctggaaaagatcactgatgcatacctggatcagtacctgtggtatgaggcagacaagcgc
agactttttccaccctggatcaaaccagctgacacagagccacctccactgctggtgtac
aaatggtgccaaggaatcaacaacctgcaggatgtgtgggagacagcagaaggcgaatgc
aatgtcatgctggagtctcgctatgagaagatgtacgagaagattgacttgacgctgctg
aacagacttctgcgtctcattgttgatcacaacattgccgattacatgacggccaaaaac
aacgttgttattaactataaggacatgaaccacacaaactcgtatggtattatccgtggc
ctgcagtttgcctcttttatcgtgcagtactatgggctggtaatggacctgctggtgctg
ggtctgcacagagccagtgagatggctggacctcctcagatgcccaatgacttcctcagc
ttccaggacacgcctactgagagtgcccatcctatacgtctttactgcagatacatagac
cgcattcacatcttcttcaggttctctgctgatgaggcgagggatctgatccagaggtac
ttgactgagcacccagaccccaacaatgagaacattgtgggctacaacaataagaaatgc
tggccaagagatgctaggatgagactgatgaaacatgatgtgaacttgggccgtgctgtg
ttctgggacatcaaaaatcgcctccctcgttctgtgaccacagttcagtgggagaacagc
tttgtgtctgtgtacagcaaggacaaccctaacctactcttcaacatgtgtggctttgag
tgtcgcatcctccccaagtgtcgcactagttatgaggagtttacacacaaagatggtgtg
tggaatttgcagaacgaggtaacaaaggaaaggacagcacagtgtttcctgcgtgtagat
gatgagtccatgcagaggttccacaacagagtgcgacaaattctgatggcttctgggtcc
accacctttaccaagattgtgaacaagtggaacactgctctgattggtctgatgacatac
ttccgtgaagccgtggtcaacactcaggagcttttagacctgctggtgaagtgtgagaat
aagatccaaacccgtatcaagattgggttgaactccaaaatgcctagtcgtttccctcct
gtggtgttttacacccctaaggagttgggtggactgggaatgctttccatgggacacgta
ctgattccacagtctgaccttaggtggtccaaacagaccgatgtgggcatcactcatttc
cgttccggtatgagtcatgaggaggatcagcttattcctaatctgtaccgctacatccag
ccatgggagagtgagtttattgactcccagagagtttgggccgaatatgccctcaaacga
caggaggccattgctcagaacagacgtttgacactggaggatctggaggactcctgggac
agaggtattccacgtatcaatacactcttccagaaggacagacacactctggcttatgac
aagggctggagagtcagaacagacttcaagcagtaccaggtgttgaagcaaaatccattc
tggtggactcaccaaaggcatgatgggaaattgtggaatttaaacaactaccgtaccgac
atgatccaggcacttggaggggtggaaggcattcttgagcacacactcttcaagggaacc
tacttccccacctgggagggtctcttctgggagaaggccagtggtttcgaagagtcgatg
aaatggaagaaactcaccaatgctcagagatctggtctgaaccagattcctaatcgacga
ttcaccttgtggtggtctcctacaatcaaccgagccaatgtatatgtgggtttccaagtg
cagttggacctcactggaatctttatgcatggtaaaatcccaactctcaagatctctctg
atccagatcttcagagctcacttgtggcagaagattcatgagagcattgttatggatctc
tgtcaggtgtttgaccaagagctggatgctttggagatcgagactgtccagaaagagaca
atccatcctaggaagtcttacaagatgaattcctcctgtgctgacattctgttgtttgcc
tcctacaagtggaacgtctctcgcccctcgcttctagcagattcaaaagatgttatggac
agcaccacaacacagaagtactggattgacattcagctcagatggggtgactacgactcc
catgatattgagcgatatgccagggccaagttcttggactacaccactgacaacatgagt
atttatccatcacccactggagtcctgattgccattgatctggcctacaaccttcacagt
gcttatggtaactggttccctggaggcaagcccctgatccagcaggccatggcgaagata
atgaaggccaacccagctctttatgtgctgagagagcgaatccgcaagggtctgcaactc
tactcttcagagcccactgagccttacctatcttcccagaactatggagaactcttctcc
aaccagatcatctggtttgtggatgacaccaatgtgtatagagtcaccatccacaagacc
tttgaaggtaacttgaccacaaaaccaatcaacggagccattttcatcttcaaccccaga
actggacagcttttcctgaaaatcattcacacatctgtatgggcaggacaaaagcgtctt
ggacagctggctaagtggaaaactgctgaagaagtggctgccctgatcagatcactgcct
gttgaagagcagcccaagcagattattgtgaccaggaagggcatgttggatcctcttgag
gtgcacttgctggacttccccaacattgtaatcaagggctctgagctccagctgcccttc
caggcctgtctgaaagtggagaagtttggagacctcattctgaaggccacagagcctcag
atggtcctgttcaatctgtacgacgactggctgaagaccatctcctcttacactgcattc
tctcgtttgatcttaatcctgagagcacttcacgtcaacaacgaccgagccaaagttatc
ttgaagcctgacaagacaacaatcaccgagccccaccacatctggcccactctgaccgat
gaggagtggatcaaagtggaggtgcagctcaaagatctcatcctggctgattatggcaag
aagaacaatgtgaatgtggcatctttgacccagtctgaaatcagggacatcatcctgggt
atggagatttctgctccatcccaacagagacagcagattgctgagattgagaagcagacc
aaggagcagtctcagctaacagccacacaaactcgcactgtcaacaaacacggagatgaa
attatcacctccaccaccagcaactacgagacgcagaccttctcttccaaaaccgaatgg
agagttagggcaatctctgctgccaacttgcacttacgtactaaccacatctacgtgtca
tcggatgacatcaaagaaactggctacacttacattctgcccaagaacgttctgaagaag
ttcatctgcatctcagatctgcgtgctcagattgcaggttatctgtatggaaccagccct
ccagataaccctcaggtaaaggaaatccgctgtatcgtgatggtgccacagtggggtacg
catcagactgttcacctgcccaaccagctgccacaacacgagtacttgaaggaaatggag
cctcttggatggatccatacacagcccaatgaatcgcctcagctatctcctcaggatgtc
accacccatgcaaaggtcatggctgacaatccttcctgggatggcgagaagactatcatt
attacttgcagtttcacccctggttcctgcacgctgacggcctacaagctgactcccagt
ggatatgagtggggtcgacaaaacacagacaagggaaataaccccaaaggttacttgccc
tctcactatgaaagagtccaaatgctcttgtctgaccgtttccttggcttcttcatggtg
cctggccaagtctcctggaactacaacttcatgggtgttcgccatgatcccaacatgaaa
tatgacctacagttggccaacccaaaagagttctaccatgaagttcacaggccatctcac
ttcctcaactttgcttctctgcaggagggtgaaatctacaatgctgatcgtgaagatatg
tatgcataa
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integrated database retrieval system
