Onychostoma macrolepis: 131520609
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Entry
131520609 CDS
T09350
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
omc
Onychostoma macrolepis
Pathway
omc04510
Focal adhesion
omc04512
ECM-receptor interaction
omc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131520609 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131520609 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131520609 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omc04147
]
131520609 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
omc00536
]
131520609 (col4a3)
Exosome [BR:
omc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
131520609 (col4a3)
Glycosaminoglycan binding proteins [BR:
omc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131520609 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
131520609
NCBI-ProteinID:
XP_058600953
LinkDB
All DBs
Position
15:23772171..23821335
Genome browser
AA seq
1652 aa
AA seq
DB search
MDPCLILRATFFGMMLLGLLTPAQTKSGCVCSVKSGCNCRGIKGQKGEMGSPGLPGVEGL
RGYRGKEGPPGFPGDNGNIGFPGMPGPKGFRGVTGTPGFSGPPGLPGFPGKEGPRGPHGL
AGCNGTKGEPGAPGFIGPMGAPGWQGMPGIQGPKGDSYYLPPSGQEKGLRGFPGRDGDKG
SPGLPGLPGPFGPEGPKGFSGMDGIPGPRGEKGLEGRSMVIPGPTGQKGQRGPPGTPGKK
GVKLFVTGPKEPKGDSGDPGDSGCPGPSGFRGRPGPKGKKGEIGEPGGPGKPGKDGLPGE
SGPKGIPGERGYPGVTGITGEKGLKGDLGSPGVPGEFIVIDNGIKGQKGFPGPPGPPGLR
GSEGFIGIPGYAGPPGASIPGPIGKPGPPGFRGVKGERGDPAPNRTGPKGQDGPPGERGP
PGDPGPPGIPKANARLGAKGFKGDRGLTGPQGLRGDPGIPGEQGELCKLCATSFDEPGPP
GQRGDSGNPGEPGVGGYPGNKGCQGFKGPDGPSGPPGNLGLPGPPGPPGPKGDHEMRHVF
GEKGQKGNCGAEGPLGINGQDGRPGTPGFKGPPGAKGNPSPPGPKGNQGDPGICGELGRP
GPMGSQGSMGVGRPGAPGEKGSMGVVGRQGNPGDLGERGSPGQVRMTPGDPGDPGLPGPP
GQQGPPGHDGCGGLQGLPGLSGLKGENGPSMPGAPGFTGPKGDKGVKGKQGPPGYGSVGR
PGPPGPPGNPGPKGEITFGSPGPKGRQGLPGDEGSLGQRGVSGPPGLSGCPGQRGRDGSP
GESGVRGLDGLPGVAGVPGCCTPGAKGDEGPLGIKGLDGPNGMPGLKGPQGETGPPGQGV
PGITGETGIPGKIGDAGLVGIRGSKGFQGRDGSPGFPGTRGDQGNPGMTGPPGVDGNPGP
PGFPGPKGLMGRNGVPGDVGNPGNPGDHGACGLKGLPSNVMSPGDPGDPGLPGLLGLPGA
KGELGLPGNYGQCGKNGIPGRSGPPGPPGDPGQNGLPGNRGPDGYFGDPGVMGFPGVKGF
KGLPGVRGGTGTPGVPGPNGPKGIKGEPSPPGPGPRGQPGEKGEPGFPGRRGEKGDKGIY
GMSGPTGLSGAPGERGEPGVPGVPGPPGAPGDEGLNGFPGPPGCEGPCGPPGVPGSAGDP
GPPGLRGDQGKDGFPGPAGDKGDRGPPAIGAPGPPGIKGEKGTKGCSGPPGPCGPPGPYG
PAGDIGPPGHLGEIGPRGFPGPSGACINGPKGEQGPNGSPGLQGLRGPRGPAGDPGPGIK
GDKGNIGPQGQVGSPGCAGDRGLPGLQGRDGDPGFKGPKGNIGPLGSTGPVGQKGQCGPI
GPPGLKGCKGTPGTKGPKGCDVVAQVMTLPGDPGFPGQVGEKGEPGEQGSQGLRGPEGTQ
GQRGSRGTDGGAGRKGAPGRKGDTGPKGTKGFPGLSGEVGPKGSQGPSGTKDGFLFTKHS
QKTSLPACPPGSKHVYFGYSLLFINGNNRGHGQDLGTVGSCLQMFSTMPFLVCNPNDTCY
YAFRNDYSYWLATDTPMSPDMGLISGGLLANYISRCSVCEAPTNVIAVHSQTMEIPACPR
GWLPLWKGYSFVMQTGAGAEGSGQPLISPGSCLEEFRKIPFIECHGRGTCNFYPDSFSFW
LASLDPSRMFSIPIRQTARQQDISRCRVCMKQ
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atggatccttgcctaatattgcgagcgacatttttcggaatgatgttgctgggacttctt
actccggcacaaactaaatcggggtgtgtttgcagtgtgaaatcagggtgcaactgtcga
ggaatcaaaggacaaaagggtgagatggggtcacctggtttgcctggtgtagaaggactt
cgggggtatcgaggaaaagaaggccctcctggatttcccggtgacaatggaaatattgga
tttccaggcatgcccggacctaaaggttttaggggagttacagggacaccaggattctct
ggcccaccaggactaccggggttccctggaaaagaggggccgagggggcctcatggtctc
gcaggatgcaatggaacaaagggtgagcctggtgccccaggttttatagggccgatggga
gctcctgggtggcagggaatgccaggaatccaaggacctaagggagatagctattacttg
ccaccctctggacaagagaaaggacttcgtggttttccaggcagagatggagataaaggg
tcaccgggattgccagggttaccaggaccatttggaccagaggggcctaaaggtttttca
ggaatggacggcatccctggaccacgaggagagaagggtctagagggtcgaagcatggta
atacctggacccacaggtcaaaaggggcagaggggaccacctggtacacctggaaaaaaa
ggcgtaaagttatttgtaacaggaccaaaggagcctaagggtgactctggggatcctgga
gacagtggatgtcctggcccaagtggttttcgtggtcgtcctggtcctaaggggaagaaa
ggggaaattggggagcctgggggtccgggtaaacccggaaaggatgggctgccaggagag
tcaggacctaagggaatccctggagaaagaggatatccaggagttactggaataacaggg
gaaaagggtctaaagggtgacctcggttcccctggtgtccctggagagttcattgtaata
gataatgggatcaaaggtcaaaaaggttttcctgggcctccaggacctcctggtctacga
ggtagtgaaggtttcatcggaattcctggatatgcgggtcctccaggagccagcatacca
ggacctattggaaaaccaggtcccccagggtttagaggtgtgaaaggggaaagaggagat
cctgctcctaaccgcacagggcccaaaggacaagatggcccaccaggggaaagaggaccc
cctggtgaccctggacctccaggaattccaaaagccaacgcccgcctgggagcaaaaggg
ttcaagggtgacagaggcctaacaggccctcagggtctgcgtggagatcctgggatacca
ggcgagcaaggagagctttgcaagctgtgtgctacttcttttgatgaacctggacctcca
ggacaacgtggagattcaggcaaccccggagagccaggtgttggaggatatccaggcaat
aaaggatgccaaggattcaaaggtccagatggtccatctggtcctccgggtaacttaggt
cttccaggacctccagggcctccagggcccaaaggagaccatgagatgaggcatgtgttt
ggggagaaaggccagaaaggaaactgtggtgcagaaggaccactggggataaatgggcaa
gacggcaggccgggcacccctggcttcaaaggaccaccaggagcaaaaggaaatcctagt
cctccaggtcctaagggcaaccaaggagatccagggatttgtggggaacttggccgccca
ggtccaatgggcagccaagggtcaatgggtgttgggcgaccaggggcacccggagagaaa
ggaagtatgggagtagttggccggcaaggaaatcccggagatttaggtgagagaggttct
ccagggcaagtacgaatgacaccaggagacccaggtgaccctggactgcctggtccacct
ggtcaacaaggacctccaggtcatgatggttgtggaggacttcaaggattaccaggattg
agtgggttaaaaggagagaatggaccgtcaatgccaggagctcctggatttactggtccc
aaaggtgataagggtgtgaaagggaaacaaggtccacctggttatggaagtgtaggccgt
cctggacctccaggaccaccaggaaatccaggtccaaagggtgaaataacatttggctcc
ccggggcccaagggtcggcagggcttgccaggagatgaagggagccttgggcaacgagga
gtttctggcccccctggattatcaggatgcccaggtcaaagaggaagagatggatcacca
ggagaaagtggtgtgcggggtcttgatggtttgcctggagtggctggtgttcctggatgc
tgtacgccaggagccaaaggtgatgaagggcccttaggcattaaagggctagatggaccc
aatgggatgccagggctgaaggggccacaaggtgaaactggaccacctggacagggtgta
cctggtataacaggtgagactggaatacctggaaaaatcggagatgctggtttggttggt
atccggggatcaaaaggtttccaaggtcgggatggttcaccaggctttccaggtacacgg
ggagatcaaggaaatcctggaatgactggtccacctggagtagatggaaatcctggacca
ccgggattcccgggacccaaaggtttaatgggaaggaatggagtaccaggagatgtagga
aaccccgggaatccaggagaccatggggcctgtggtctcaagggactgccatcaaatgtt
atgagtccaggggatcctggtgaccctggcctaccaggtcttcttggtttacctggcgct
aaaggggaattaggactcccaggcaattatggacaatgtgggaagaatggaattccaggc
agatctggtccaccaggccctcctggtgaccctggccagaacggacttcctggaaatcga
ggtcctgatggatactttggggacccaggagttatggggtttccaggagtaaaaggcttc
aaaggtttacctggtgttcgtggggggactgggactcctggtgtcccaggaccaaatgga
ccaaaggggatcaaaggtgaacccagcccccctggaccagggcctcgaggacaacctggt
gaaaaaggtgagccaggctttccagggcgtagaggggaaaaaggtgacaagggtatatat
gggatgagcggtcccacaggtttatcaggggctcctggtgaaagaggcgaacctggagta
ccaggagttccaggaccccctggagctccgggtgatgaaggtttaaatgggtttccaggt
ccacctggatgtgaaggaccctgtggtccaccaggtgttcctggttcagctggagatcct
gggcctccaggacttcgcggagaccaaggcaaggatggctttcctggaccagcaggggat
aaaggagacagagggcccccggcaattggagctcctggcccacctggcatcaagggtgag
aaaggtactaaaggctgttctggacccccagggccatgtggaccaccaggaccctatggt
ccagctggagatattggtcctccgggccatcttggggaaatagggccacgcgggtttcca
ggtccatctggtgcctgtatcaatggtccaaaaggggagcaaggacctaatggatcacct
ggcctacaaggactcagaggaccacgtgggcctgctggtgacccaggtccaggcataaaa
ggagataaaggcaacatcgggccccagggacaagtgggatcacctggttgtgctggtgac
cggggacttccagggttgcaaggtagagatggagatcctggtttcaagggtccaaaagga
aatatagggccattgggttctactgggccagtcggccaaaaaggacaatgtggtccaatt
gggcctcctggattaaaaggttgtaaaggaactcctggaactaaagggcctaaagggtgt
gatgttgtggctcaggtcatgactctcccaggagaccctggtttccctggacaagtcggg
gaaaaaggagaaccaggagaacaaggatctcaagggctacgaggtccagaaggaacacaa
ggtcaaaggggaagcagaggtacagatggaggtgctggacgaaaaggggcacctggacga
aaaggagacactggcccaaaaggaacaaaaggttttcccggtttgtcaggcgaagtgggt
cccaagggttcacaaggtccatctggcacaaaagatggattcctttttaccaagcatagt
cagaaaacatcgttaccagcctgtcctcctgggtcaaaacatgtatactttggatattcg
cttctcttcatcaacggcaataaccgcggacatggacaagacctaggaactgtgggaagc
tgtttgcaaatgttctccaccatgcctttcctggtgtgcaatcccaatgacacatgttac
tatgcctttcgaaatgattactcctattggctggctacagacacaccgatgtctcccgac
atgggattaatatctggtggtttgttggctaattatatcagcaggtgttcagtatgtgag
gcgccaactaatgtaatagcagttcacagccagaccatggaaatcccagcgtgccctaga
ggatggcttccactatggaaaggttactcctttgtaatgcaaacgggtgcaggtgcagaa
ggttccgggcagccgctgatttctcctggatcctgtctggaagaattccggaagattccc
ttcatagagtgtcatggtcgtggcacctgcaacttctatcctgattccttcagcttctgg
cttgcatcacttgatcctagcagaatgttcagtattccaatccgccagacagcaagacag
caagacatcagccgctgtcgggtctgtatgaagcagtag
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