Onychostoma macrolepis: 131521951
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Entry
131521951 CDS
T09350
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
omc
Onychostoma macrolepis
Pathway
omc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131521951 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omc03021
]
131521951 (smarcc1a)
03036 Chromosome and associated proteins [BR:
omc03036
]
131521951 (smarcc1a)
Transcription machinery [BR:
omc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131521951 (smarcc1a)
Chromosome and associated proteins [BR:
omc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131521951 (smarcc1a)
PBAF complex
131521951 (smarcc1a)
GBAF(ncBAF) complex
131521951 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
131521951
NCBI-ProteinID:
XP_058603104
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All DBs
Position
16:7810602..7826887
Genome browser
AA seq
1101 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGAGSSIGRKKDGGPSSKFWESSETVSQLETVRLWIGKHY
KKYVQTDSPTCKTLAALVVQLLLFQEDAFGRRVSNPALTKLPAKSFLDFKPGGALCHILG
SAYKFKNEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLTRPIVYIVSDMEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPAQVEEEEWLRPVMRKEKQVLVHWGNYPDSYDTW
VSTSDVDGDVEDPPSSEKPWRVHAKWVIDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EEVSSRTPDRKDRKSLVSGKKRRRSPSPPSTPAESRKKGKKGNPGSQGRRRGHQNEDEQD
EDLTKDLEDPSPVPGMEEVTLPKNVNQKKDSENTPVKGGTVADLDDQEDDSLASGGKEED
EQGKTEVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAESRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLLNFGLRTDI
YSKKNPKGKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAARAALEEFSRVR
EEVPTELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEPTETEKMDTDSD
SQPDKAESKDEAEKPSESAEKPTETEKEKNETTEKSEPQEEEESEGGESKTAEKDKEEDM
ETTEEGKEGEEEKEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLVA
LLVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQ
MEQQAAAQQNAGGHHGPPPHGPPPHGPPPGMHPGHPGHPGHPGPGFPPMHHPIGPHHVPQ
TGPMVGPGQPMPGQPMPGRMMPGPSPVGPQQGGMLPMMGPRHPGPPNGMYPVPPPTAQPD
GMPPGPVGPSVSAPPPRAAEN
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggccggccaa
gcgggcgccggttcctcaatcggacggaaaaaagacggagggccttcttccaaattttgg
gagagctcagaaacggtgtctcagctggagacagttcggctgtggatcgggaaacattat
aagaagtatgtccaaaccgactctcctacatgcaaaaccttggctgcgctggtggtgcag
ttgctgctgtttcaggaggatgcatttgggcgtagagtcagcaatcctgcccttaccaaa
ctacctgcaaagagctttctggatttcaaacccggaggagccctttgccacattctgggc
tctgcatacaagttcaaaaacgagcagggctggaggaggtttgatctgcagaacccatcc
agaatggatagaaatgtggagatgttcatgactattgagaagactcttgttcagaacaac
tctttgacccgaccaattgtgtacattgtgtctgacatggagcaaaaacaagccaacaag
ctcaaagacatcattaagagacatcagggcaccatcactgaagataagtcaaaggccact
catattatttacccctcccctgcccaggttgaagaagaggaatggctacgtcctgtcatg
cgcaaagaaaagcaagttttggttcactggggtaattaccctgacagttatgacacatgg
gtatccacaagtgatgtggatggagatgttgaggatccaccaagttctgagaaaccatgg
agggtgcatgctaaatgggtcatcgacacagatgctttcaacgagtggatgaatgaggaa
gattatgaagtggatgagaacaagaagcctgtgagttttcgccagcggatcttcccaggg
gaggaagtgtcttcccgtacacccgatcgcaaggaccgcaagtccctggtttccggcaaa
aagaggagacgctctccatccccacccagcacccctgcagagtcccgcaaaaagggcaag
aaagggaatcctggatcacaggggagacgccgtggacatcaaaatgaagacgagcaggat
gaagacctcacaaaggacctggaagatccctcccctgtaccaggaatggaggaagttaca
ttgccaaagaatgttaatcagaaaaaggacagtgagaacacaccagtgaaaggcggaacg
gttgctgatttggatgaccaggaagatgattcactagcatctggtggcaaggaggaagat
gaacagggcaaaacggaggtcaatcgtctgattgactctgaggacaacgtgactgaacaa
acccatcacatcattatacccagctatgctgcctggttcgactacaacagtatacatgaa
attgagaggcgtgccttgcctgagttcttcaatggcaaaaacaaatctaagactccagag
atctatctggcttatcgtaacttcatgattgacacataccggctgaatcctcaggagtac
ctgacctccacctcctgcaggagaaacctcactggagatgtgtgtgcggtcatgagagtg
catgcctttttggagcagtgggggctggtgaactaccaggttgatgctgagagcagacct
ctccccatgggccctccaccaaccccacatttcaacgttctggctgatactccctctggc
ttggtgccactgcaccaccgccccccacaggttccccctgctcagcagatgctgaacttc
ccagagaagggcaaagacaagccaactgacctgctgaactttggcctgcgtacagacatt
tactcgaagaagaatcccaagggtaaaggggctgcaggtgggagagagtggactgagcaa
gaaacattgcttctgttggaggctttggagatgtataaggatgactggaacaaggtttcg
gagcatgtgggcagccgtacacaagatgagtgcatcttgcacttcctacggctgcccata
gaggatcaatacctggagagctctgaagcctctctaggccctttggcttaccagccgatc
ccctttagccaatcaggaaatcctgttatgagcactgttgcattccttgcctctgtggtc
gacccgcgtgtggcggcggctgctgccagagcagctttggaggagttctcgcgtgtgcgt
gaggaagttcccacagaactggtggaggctcatgtgaagaaggtacaggaagccgctcgc
agcacaggaaaagtagaccctgcgttcggcctggagagcagtggcattgccggtacagct
cctgaggaaccagagaagacggaacctacagagactgagaagatggacactgactcggat
tcccagcctgacaaggcggagtcaaaggatgaagcagagaagcccagcgagtctgcggaa
aagccgacagagacagagaaggaaaagaatgagactacagagaaatctgagccgcaggaa
gaggaagagagtgagggaggagaatctaagacagcagagaaagacaaagaggaggacatg
gagaccacagaggaagggaaggagggtgaggaagaaaaggaggaaggaaagaaaaagctt
gagttggatatcggagagggcaacatcgccaccgctgccgctgctgctctggcctctgct
gccaccaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtggct
ctgctggtagagactcagatgaagaagctggagctcaaactcagacactttgaggagctg
gagaccatcatggaccgtgagaaagaagcactggagctccagaggcagcagcttttgaca
gagcgacaagcattccacatggagcagttgaagtacgctgagatgaaggctcgtcagcag
atggagcagcaggcagctgcgcagcagaatgcaggaggccatcatggaccacctccacat
ggcccacctccccacggcccacctccaggcatgcaccctggacacccaggacatcccgga
cacccaggtcccggatttccccccatgcaccatcccataggtccccaccatgtccctcag
acaggaccaatggttggaccaggccagcccatgccaggtcagcctatgccaggccgaatg
atgcctggaccttccccagttggaccccaacagggtggcatgctgcccatgatgggccct
cgacaccccggaccacccaacggcatgtacccagttccacctccaaccgcacagcctgac
gggatgccccctggcccagtgggaccttctgtatctgcgccccctcctcgtgctgctgaa
aactaa
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