Onychostoma macrolepis: 131522158
Help
Entry
131522158 CDS
T09350
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
omc
Onychostoma macrolepis
Pathway
omc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131522158 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131522158 (smg5)
03032 DNA replication proteins [BR:
omc03032
]
131522158 (smg5)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131522158 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
131522158 (smg5)
DNA replication proteins [BR:
omc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
131522158 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
DUF1515
Motif
Other DBs
NCBI-GeneID:
131522158
NCBI-ProteinID:
XP_058603439
LinkDB
All DBs
Position
16:complement(5954060..5972032)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVETVHKLDVIISGKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPLPAHGSQSASEEEEEHDSVCSVLPDSLIFKMVVTC
LMVVHSLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESDVPPLHTDNTDDAD
ARDHSSAALSKEKTLQNGSLEEDDEDEKENEEDEPKGNGKTTGTKKSLEKKRSAEETQKQ
KRKFSRLSMLRRRRCAHKEDESDLSEGFESDEEEDEEGGGPVDGLGAARVQMNSLGREGR
RGPLPEDGSWETGSEEDEGGTAFDVETDSDMNSQESRSDLEDMEDAEHAPQQQQQQQQEE
DVQPQPPREENSTPPVTNGPSVSNDASISSNLQAMSSQLFQAKRCFRLAPTFSNVLLRPA
ASTNPAPDSSPAPVQEATPPAEEISRNMSPEIANGTNDNGTLLTNPDSDSEGSEHSNHSI
HSEKTLSERLEILTNQGLIQVVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPEG
SKMLETDLGLNKDVTELLNECEQPGLVQTLLLPEDLALRHLPALSVAHRRLDFTSQRPPL
TPLDECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQDNLVQQAKAQFRMAE
EEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTAVLCQHLGLLRQLAA
SGCFIIIIPRTVIDGLDLLKKENSGARDGIRFLETEFRKGNRYIRCQKETGRSFERDKLK
RQDIEAWHLYKMVDSCRQLTGSQSSGDEDTAGMVTILTGHSLEELTERSASMKAAVQAVA
AAGMELKNITDFYRQWKEMG
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcggacccggtcaagacagcgagccagaggccaaagtgcttcatattaaacgactg
tacagggctgtggtggaaactgtgcataagttggatgttataatcagcggcaagtcatca
tatagggaggtcttcaaacctgaaaatatcagtttgaggaacaaattgcgggaactatgt
gtaaagctgatgttcctgcaccctgtggactatggacgcaaggcagaagagctgctgtgg
aggaaggtctactatgaggttattcaggtcatcaagaccaacaagaagcatattcacagc
cgcagtgctctggagtgcgcctacaggacccatctgatcgctggggtgggcttctttcaa
cacctgctgctctacatccagtcacactatcagctggagttacaggactgcattgactgg
acacacgtcactgacccactcatcggtcgtaagaaaccagtctcagccacccctaaagag
atggaatgggcccagatggcatgtcacagatgccttgtgtacttgggagatctcgcgcgg
taccaaaatgaactggcgggagtggaggcagagcagctggcagagcgtttttatcaccag
gccttgtctgtcgcacctcacgtcggcatgccgtttaatcagctgggtacgcttgctgga
agtaaattttataatgtggaggccacttactactacttgcgctgtattcagtcggagact
ccctttgatggcgcttatgggaatttaaagcgtctgtttgacaaggcagccaagatgtac
caccaggtgaagaaacaagagatgaaaaaactttcaccatcacgtcagaggtcaaaagac
atcaaaagactgctggtgagcttcatgtatttgcagagcctgctgcagcccaagaacagt
ctgatggagacggagctgacgtcactgtgccagtctgtgctggaagactttaacctggtg
ctgttctacctcccccttcctgctcatggcagccagtcagccagcgaggaggaggaagag
cacgactcagtctgctctgtgcttcctgacagcctcatattcaagatggtggtgacttgc
cttatggtggtgcacagtttgaagagaggggcttcaaagcagtacagtgcctccattgct
ttcacgttggctctgttctcccatttggtcaatcatgtcaacattcgactgcaagctgaa
ctggaggagggagagagtgacgtcccacccctgcacactgataacactgacgacgctgat
gccagagatcacagtagtgctgctctctcaaaggagaaaaccctgcagaacggctcccta
gaggaagatgatgaagatgagaaggagaatgaggaggacgagcctaaggggaatggaaag
acaacagggacaaagaaaagcctggagaagaaaagatcagctgaggagacgcaaaaacag
aagcggaagttctcacggctctccatgcttcgccgcagacgctgcgctcacaaggaggat
gagagcgacctgagcgaaggatttgagagtgacgaagaagaggatgaggaaggtggcggt
ccggtcgacggtctgggagccgctagggtccagatgaactctttagggagggaagggcgg
aggggaccgctgccagaggatggcagctgggaaaccggttcagaggaagacgagggcggc
acggcttttgacgtcgagacggactctgacatgaacagtcaggagtctcgttcggacctc
gaagacatggaggatgctgagcatgcgccacaacaacaacagcagcaacaacaagaggaa
gatgtgcaacctcagccgcctagggaggaaaactctacacctccagtaaccaacggcccc
tcagtgtctaatgatgccagcatcagcagcaacctgcaggccatgtcctctcagctcttc
caagccaaacgctgctttcgactcgcccccacctttagcaatgtattgctccgccctgca
gctagcactaaccccgccccagactcaagccctgccccagtgcaagaagccacacctcct
gctgaagaaatatcaagaaacatgagtccagagattgctaatggaaccaatgacaatggt
acattgcttacaaatcctgactctgattctgagggcagtgagcacagcaaccattcgatc
cacagtgagaaaaccctttctgagcgattagagattctgaccaatcagggtctcatccag
gtggtgaaggtcttcttggattggctgaggacgaacactgatatcatcctcatgtgcgct
cagagttctcagagcttgtggaacagactgtcagtgctgcttaatttgcttcctgagggc
agcaagatgttagaaactgatttaggtctgaataaggatgtaacagaactgctgaatgag
tgtgagcagcctggtttggtccagacgctgctgctgccagaggatctggccctccgccac
cttcctgccctcagcgtagcccatcgacgcctggacttcactagccagagaccccctctt
acccctctggatgagtgtgtggtgcgcgtgtgctgcattcgcagctttggtcacttcctc
acaaatctccaaggcaacgtgttgcacttcaacccggaggcgggcatcttcaccagcatc
agccaatcagagcaggacaacctggttcagcaggccaaggcccagttccgcatggcggag
gaggaagctcgcagaaaccggctcatgagagatatggcccagctgcgcctacagttggag
gtctctcagctggagggcagtctgcaacagcccaaagcacagtcctccatgtctccttat
ctggtgccagataccgcggttctctgccagcacctggggctgctcagacagctggctgcc
agtggctgcttcatcatcatcatccctcgcacagtgattgatggtctggatttgctgaag
aaagagaactctggagcgagagatggaatcagattccttgagacagagttccggaagggg
aacaggtacatccgctgccagaaagagaccggaagaagctttgagagggacaaattaaaa
cgacaggatatcgaagcctggcacctgtataagatggtggacagctgtcgccagctgacg
ggatctcagagcagtggagacgaagacaccgctggcatggtgaccattctgacaggacac
tcactagaggagctgactgaaagatcagcttccatgaaggcggctgtacaggcggtggca
gcagcaggcatggagctgaagaacatcaccgacttctaccggcagtggaaagagatgggc
tga
DBGET
integrated database retrieval system
