Onychostoma macrolepis: 131522329
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Entry
131522329 CDS
T09350
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
omc
Onychostoma macrolepis
Pathway
omc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131522329 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131522329 (ddx61)
03036 Chromosome and associated proteins [BR:
omc03036
]
131522329 (ddx61)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131522329 (ddx61)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131522329 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
131522329 (ddx61)
Chromosome and associated proteins [BR:
omc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131522329 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
131522329
NCBI-ProteinID:
XP_058603728
LinkDB
All DBs
Position
16:16756747..16764560
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AA seq
483 aa
AA seq
DB search
MATARTEIPASVMPMSKQNGQSKPMNLQSGSLTSSSQSGKTPLMPQKGSSIPQSSGGIRF
GDDWKKCLQLPPKDMRVKTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IVLSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYVQAIVLVPTRELALQVSQISINMS
KHLGGVKVMATTGGTNLRDDIMRLDETVHAIIATPGRILDLMKKGVAKVDKAQMIVMDEA
DKLLSQDFVVLIEDIISFLPKNRQILLYSATFPTSVQKFMSKHLQKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRY
GHLGLAINLITSEDRFNLKGIEDQLMTDIKPIPSSIDKSLYVAEFHSMNPDEEEATHKAG
ELN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcgagaacagaaatccctgcttcagtcatgccaatgagcaaacagaatgga
cagtccaagcccatgaacctccagtcaggatcgcttacttcctcatcacagtcgggaaaa
acacctctgatgccccagaaaggaagcagtataccccaaagcagtggtggtatcaggttt
ggtgatgactggaagaagtgcctgcagcttccaccgaaagacatgagagtgaaaaccaca
gatgtgactgcaaccaaaggaaacgagtttgaagattactgccttaagagggaactgctg
atgggcatcttcgaaatgggctgggagaagccttcccctatccaggaggagagtattcct
attgtcttgtcagggagggacattcttgcccgagctaaaaatggcacaggtaaaagcgga
gcctacctcatccccctcttggaaaggattgacttgaagaaggactatgttcaagccata
gtgttggtaccaactcgtgagttggctctgcaggtgagccagataagtatcaacatgagc
aagcaccttggtggcgtcaaggttatggctacaacaggtggcactaacctgagggatgac
atcatgcgtcttgatgagactgtacatgctataatagctaccccaggaaggatccttgac
ttgatgaagaaaggtgtggccaaggttgacaaagctcagatgattgtgatggatgaggca
gataaattgctttctcaagacttcgtggtgctcattgaggacatcatcagcttcctgcct
aaaaaccgccagattctgctctattctgccactttccccaccagtgtgcagaagtttatg
agcaaacaccttcagaagccatatgaaatcaatctgatggatgagctgacactgaaaggc
atcactcagtactatgcttatgtgacagaaagacagaaagtgcactgtctcaacacactg
ttctccaggctccaaatcaaccagtcaatcatcttctgtaactccacccaaagggtggaa
ctccttgccaagaagatcacacaacttggctattcctgcttttacatccatgccaagatg
atgcaggaatacagaaatcgtgtgttccatgacttcagaaacggactgtgtaggaacctg
gtctgcacggatcttttcacaagaggaattgacatccaggctgtcaatgtagtgatcaac
tttgacttccccaaaaatgcagagacatatctgcaccgcataggtcgatcaggtagatac
ggtcatctgggtctggccattaacctgatcacctcagaagatcgttttaacctaaagggc
attgaggaccagctgatgactgacataaagcccatacccagcagcattgacaagagcctc
tatgtggcggagtttcactccatgaaccctgatgaagaggaggctactcacaaagcaggc
gagcttaattaa
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