KEGG   Onychostoma macrolepis: 131524133
Entry
131524133         CDS       T09350                                 
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
omc  Onychostoma macrolepis
Pathway
omc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131524133 (sf3b3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:omc03021]
    131524133 (sf3b3)
   03041 Spliceosome [BR:omc03041]
    131524133 (sf3b3)
   03036 Chromosome and associated proteins [BR:omc03036]
    131524133 (sf3b3)
Transcription machinery [BR:omc03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     131524133 (sf3b3)
Spliceosome [BR:omc03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    131524133 (sf3b3)
 Complex B
    131524133 (sf3b3)
 Complex C
   U2 SnRNP specific factors
    131524133 (sf3b3)
Chromosome and associated proteins [BR:omc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     131524133 (sf3b3)
    TFTC complex
     131524133 (sf3b3)
SSDB
Motif
Pfam: Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A
Other DBs
NCBI-GeneID: 131524133
NCBI-ProteinID: XP_058606895
LinkDB
Position
18:complement(11355217..11384814)
AA seq 1217 aa
MFLYNLTLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
VIRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVATEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQAQDAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAIFNQVAFP
MQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRMINPIQGNTLDLVQLEQNEAAFSVAVCRFSNGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRLVGSGDKLEFLHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMAAADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgtttctgtacaacctgaccctgcagcgggcaactggcatctcccatgccatccatggc
aacttctcaggaactaagcagcaggagattgttgtttcccgtgggaaaattctggaactg
ctgcgtcctgatgccaacacggggaaggtccacacgctgcttactatggaggtgtttggt
gttatccgatccctcatggctttcaggttgacaggtggaactaaagactatgttgtggtc
ggaagtgactctggccgaattgtgatcttggagtaccatccttccaagaacatgtttgaa
aagatacaccaggagacgttcggcaagagcggctgcagacgtatcgtgccggggcagttc
ctcgctgtggacccaaagggcagagctgttatgataggtgccatagagaagcagaagttg
gtttacatcctgaacagagatgcagctgcccgccttaccatctcctcccctctagaggcc
cacaaggctaatacgcttgtttaccatgtggttggtgtggatgtggggtttgagaacccc
atgttcgcctgcctggagatggactatgaggaggcagataacgatcccaccggagaggct
gctgcaaacacacagcagactctgaccttctatgagttggacttgggcctcaaccatgtg
gtgcgcaagtacagtgaggcactggaggaacacggcaacttcctcatcacagttcctggt
ggttcggatggtcccagcggtgtgctcatttgctctgagaattatatcacctacaaaaac
tttggggaccaaccagacatccgttgcccaatcccacgcagaaggaatgacctggatgat
cctgagcgaggcatgatctttgtctgctctgccacccacaagaccaaatccatgtttttc
tttctagcccagacagaacagggagacatctttaaggttactttggaaactgatgaggag
atggttactgagatcaggatgaagtattttgataccatcccagtggctacagccatgtgt
gttttgaagactggcttcttatttgttgctacagagtttggaaaccactacctgtatcag
attgcccacttgggtgatgacgacgatgaaccagagttttcctctgccatgcctttggag
gagggagacacattctttttccaacctcgcccccttaagaaccttgtgctggtcgacgag
caagaaaatctttctcccatcatgtcctgccagattgctgatttggctaatgaagacacc
ccgcagctatatgtggcgtgtggcagaggacccagatctacactgagagttttgagacac
ggactggaggtttcagaaatggctgtctctgaactgcccggtaaccccaatgctgtgtgg
actgtcaggagacatgtagaagatgagtttgatgcctacatcattgtgtccttcgttaac
gctaccctggtgctttctatcggtgagactgtggaagaagtgacagactctggtttcttg
ggcacaacacccaccctgtcatgctcattgcttggggaagatgcacttgtgcaagtctac
ccagatgggatccgtcatatccgtgcagataagagagtgaacgaatggaagactccaggg
aagaagacaatcgtccgatgtgctgtcaatcagaggcaggtggtcatcgctttgactgga
ggagaactggtctactttgagatggacccgtctgggcagctgaatgaatacactgagagg
aaggagatgtcggcagatgtggtgtgcatgagtttggcaaatgtgcctcctggtgaacag
cgttcccgtttcttggctgttgggttggtggacaatacagtccgcatcatctccctggat
ccatctgactgtctacagccgttaagtatgcaggctcttcccgcccagccagagtctctt
tgtattgtggagatgggtggagtggaaaaacaggatgagctgggagaaaagggcaccatt
ggctttctatacctcaacatcggcctgcagaacggagtgttactgcgtactgttttggat
ccagtgaccggggacctgtctgatacgcgaactcggtatcttggttctcgtcctgtcaag
cttttcagagtccggatgcaggcccaagacgctgttctggccatgtctagtcgttcttgg
ctgagttactcataccagtctcgtttccacctgaccccactgtcatatgaaaccttagag
tatgcttcagggttcgcttctgaacagtgtcctgagggtattgttgccatttccaccaac
acactgaggattttggctcttgagaaactgggcgccatcttcaaccaggtggcattccca
atgcagtatacacctcgcaagtttgtcatccacccagagacaaataacctgatactgatc
gaaacggaccacaatgcctacactgaagccaccaaagcccagcgcaagcagcagatggct
gaggaaatggtggaggcagcgggggaggatgaaagggagctggctgcagaaatggcagca
gctttcttgaacgagaacctgccagaagccatctttggggcacctaaagcaggctctggg
cagtgggcctcactagtgcgcatgatcaaccccatccaaggaaacacactggacctggtg
cagctggagcagaacgaggctgctttcagtgtggctgtatgtcgattttccaatggaggt
gatgattggtatgtgttggtgggtgttgccagagacatgatactaaatcctcgctccgtt
ggtgggggttatatttatacctatcggctagttggaagtggggacaagctggagttttta
cacaagacgcccgtggaggacgtgcccctggctattgcaccctttcaaggacgtgtgttg
gttggagtgggcaaactcttgcgcatctatgacttgggaaagaagaaacttcttcgcaag
tgtgaaaacaagcatgttcctaacttggtaacgggcatccacacaattgggcagcgcgtg
atagtatccgatgttcaggaaagtctattctgggtacgctacagacgcaacgagaaccag
ctcatcatctttgccgacgatacatatcctcgttgggtcactaccgcctgcctgcttgat
tatgacaccatggctgctgcggataagtttggaaatatctgcgttgtccgcctgcctccc
aataccagcgatgatgttgatgaagaccccacagggaacaaagcattgtgggacagaggc
ttgcttaacggagcatcacaaaaggccgaggtgattattaactatcacataggagagacg
gttctgtccctccagaaaactaccctcatccctggaggatcagagtccctggtgtacacc
acgctatcgggaggcattggcatcctggtgccgttcacttctcatgaggatcatgacttc
ttccagcacttagagatgcacatgcgctctgagtttccccctctgtgtggtcgtgatcac
ctcagcttccgctcgtactattttccagtaaagaatgtgatcgatggagacctttgtgag
cagtttaactccatggacccacataagcagaagagtgtctctgaggaattggaccgcacg
cctccagaggtgtcgaagaaattggaagacatccgaacacgctatgccttctag

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