Onychostoma macrolepis: 131524164
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Entry
131524164 CDS
T09350
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
omc
Onychostoma macrolepis
Pathway
omc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131524164 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131524164 (ddx6)
03036 Chromosome and associated proteins [BR:
omc03036
]
131524164 (ddx6)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131524164 (ddx6)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131524164 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
131524164 (ddx6)
Chromosome and associated proteins [BR:
omc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131524164 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-GeneID:
131524164
NCBI-ProteinID:
XP_058606951
LinkDB
All DBs
Position
18:complement(28395883..28420551)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGSQTTQPAQVKPSSTVNNGNSQPAPT
ANTIIKPGDDWKKNLKLPPKDLRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDILRLDETVHVVIATPGRILDLIKKGVAKVNQVQ
MIVLDEADKLLSQDFVQMMEELLSYLPKQRQILLYSATFPLSVQKFMNSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEEV
KL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccagtgattctgggactgtcgaatcaaaatggccaa
atgcgaggctcggtgaagccagcaggtggtccaggtggaggggggtctcaaacaacgcag
ccagcccaggtgaaaccctccagcacagtcaacaatggcaactcccagcctgcacccaca
gccaacactatcatcaagcctggggatgactggaagaagaatctaaagcttcctccgaag
gatttgcgcatgagaacttcagatgtgacggcaaccaagggaaacgagtttgaggattac
tgcctgaaacgggaactgcttatgggcatctttgaaatgggctgggagaaaccgtcacct
atacaggaggagagcattcccattgcgttgtctgggagggacattctggccagagctaag
aacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgacctgaag
aaagacagcatacaagcattggttattgtgcccactagagaactggctttacaagtgagc
cagatatgtattcaggtcagcaaacacatgggcggggtcaaggtcatggcaactacaggt
ggaaccaatctccgtgatgacattttgagacttgacgaaacagtgcatgttgtcattgcc
actccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaagtacag
atgatcgtgttggatgaggcagataagctcctgtcacaggactttgtacagatgatggag
gagcttctgagctatttgcccaaacaaaggcaaattttgctgtactctgccaccttcccg
ctgagtgtgcagaagttcatgaactcccatctgcagaagccctatgagataaacctgatg
gaggagctgaccctgaagggggttactcagtattacgcctatgtaactgaaaggcagaaa
gtccattgccttaatactctgttctccaggctccagatcaatcagtctataatcttctgc
aattcatcacagcgagtggagctcctagcaaagaagatctctcagcttggatactcctgt
ttctacattcatgccaagatgagacaggaacacagaaaccgtgtgttccatgatttcaga
aatggcttatgtcgaaatcttgtctgcactgatctcttcacaagaggaattgatatacaa
gctgtgaatgtggtgatcaactttgatttccccaaacttggggagacatacctccatcgc
attggcaggtctggccgatttggacacttgggtctcgccattaacttgatcacttacgat
gaccgctttaacctgaaaggtattgaagaacagctgggtactgaaatcaagcccattccc
agcagtattgataagagtctatatgtggccgagtaccacagtgagagtggagaggaggtt
aaactgtga
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