Onychostoma macrolepis: 131525830
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Entry
131525830 CDS
T09350
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
omc
Onychostoma macrolepis
Pathway
omc03013
Nucleocytoplasmic transport
omc03015
mRNA surveillance pathway
omc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131525830 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
131525830 (ddx39b)
03015 mRNA surveillance pathway
131525830 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131525830 (ddx39b)
03041 Spliceosome [BR:
omc03041
]
131525830 (ddx39b)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131525830 (ddx39b)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131525830 (ddx39b)
Spliceosome [BR:
omc03041
]
Complex C
Other components
EJC/TREX
131525830 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
131525830 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
131525830
NCBI-ProteinID:
XP_058609774
LinkDB
All DBs
Position
19:8435116..8444213
Genome browser
AA seq
435 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAGGVGDTGLGHNDGGISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgatgttgagaacgagctgttggactatgaggaggatgaggttgatgca
ggtggtgtcggggacacaggcctgggacacaacgatggcgggatatccatcaggaaagaa
ggggtcaaagggtcatatgtgtccatccactcctcaggattcagggatttccttctcaaa
ccagaactgctgagagctatagtggactgcggctttgaacatccatctgaagttcagcat
gaatgcattcctcaggcgatcctggggatggatgtattatgtcaggccaagtctggaatg
gggaagacggctgtctttgtgttggccacccttcagcagctggagccagtgaccgggcag
gtatcagtgttggtgatgtgtcacacccgagagctggccttccagatcagcaaagagtac
gagcgcttctccaaatacatgcccagtgtcaaggtggcagtgttctttggtggtttatct
ataaagaaggatgaggaggttctgaagagagagagccctcatgtggtggtgggaactcct
ggacgcattctagctctgtctcgcaacaagagtctcaacctgcgccacatcaagcacttc
atcctggacgaatgcgacaagatgctggagcagcttgacatgcggcgtgatgtccaggag
atctttcgtatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcctgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gagaccaagctgacgcttcatggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaaactctttgacctcctggatgtgttggagttcaatcaggtggtgatcttc
gtgaagtccgtgcagcgttgtattgctctggctcagttgctggtggagcaaaatttccct
gccattgccattcatagagcaatgcctcaagacgaaagattagctcgatatcagcagttc
aaggatttccagagacgaatcctggtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacatcgccttcaattacgacatgcctgaagattcagacacatacctgcac
agggttgcgagggccggcaggtttggaacgaaaggtctggccatcacctttgtgtcagat
gagactgacgcccgcactttgaacgatgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcttcatatattgaacaaacacgataa
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