KEGG   Onychostoma macrolepis: 131526450
Entry
131526450         CDS       T09350                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
omc  Onychostoma macrolepis
Pathway
omc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131526450 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omc03041]
    131526450 (snrnp40)
Spliceosome [BR:omc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    131526450 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    131526450 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_SCAP ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_HPS5 Ge1_WD40 Cytochrom_D1 WD40_like Beta-prop_IFT140_2nd Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 131526450
NCBI-ProteinID: XP_058610770
LinkDB
Position
19:17332013..17336311
AA seq 347 aa
MIEPKKRGAEMAVVPAGVKRPRTELVAAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASIHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLCLSADGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCAWSPDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgcggcgcagagatggcagtcgttcccgccggagtgaagagg
ccccggacagagctggtggctgcagcccagtcccagcagctctctgctatgggccccccg
cgcagctccagtctgcaggctcccataatgctgctctctggtcatgaaggtgaagtttac
tgctgcaaatttcaccccaatggagccacgttagcctcctctggatatgaccgtctcatc
ttgatgtggaatgtatatggagactgtgagaactatgcaacgcttaagggccacagtgga
gctgtgatggagcttcattataacacggatggcagtctgcttttttctgccagtaccgac
aagacagtgtgtgtgtgggacagtgagacaggggagcgtgtgaagcgtctgaaaggtcac
acgtccttcgtgaactcatgttttccggctcggcgtggaccacagctggcctgtacgggc
agtgatgatggaactgtgaagctgtgggacattaggaagaaggcctctattcacacattc
cagaacacgtatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
ggaggcatcgacaacgacataaaggtatgggacctcagacagaacaagctgatttacagt
atgcagggtcatggagactctgtgacaggtctgtgtctcagtgcagacgggtcctacctg
ctgtctaactcaatggataacagcgtgcgtgtctgggatatccgtccatttgcaccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataactttgagaagaatcttctcaga
tgcgcttggtctcctgatgggagtaagattgcagctggttctgctgacaggtttgtgtat
atttgggacacaacatcccgtagaatcctttataagctccctggtcatgctgggtctgtg
aatgaggtcgctttccatccagaagaaccaattgttctttctggatccagtgataaacgc
ctctacatcggagagattcaataa

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