Onychostoma macrolepis: 131527095
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Entry
131527095 CDS
T09350
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
omc
Onychostoma macrolepis
Pathway
omc03008
Ribosome biogenesis in eukaryotes
omc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
131527095 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
131527095 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omc03021
]
131527095 (xrn2)
03019 Messenger RNA biogenesis [BR:
omc03019
]
131527095 (xrn2)
03009 Ribosome biogenesis [BR:
omc03009
]
131527095 (xrn2)
03016 Transfer RNA biogenesis [BR:
omc03016
]
131527095 (xrn2)
Transcription machinery [BR:
omc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131527095 (xrn2)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
131527095 (xrn2)
Ribosome biogenesis [BR:
omc03009
]
Eukaryotic type
Pre-60S particles
RNases
131527095 (xrn2)
Transfer RNA biogenesis [BR:
omc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
131527095 (xrn2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
PGBA_C
Motif
Other DBs
NCBI-GeneID:
131527095
NCBI-ProteinID:
XP_058611939
LinkDB
All DBs
Position
20:complement(28770908..28803791)
Genome browser
AA seq
956 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCLEEKAKEYNGIKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKKKMREEVIQRGGYLPSEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLTNDPGWRNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCSQMGHEIKDCQGLAREKQGEHDEFADTVPGSEQE
FIFIRLIVLREYLERELTMASLPFPFNFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKDDDESFKRRMKE
KKKRMKADQRPSFVPGGQFAPQALGGRDRPMAVQNARQAAYEMRMQGNQRNQEAAQSLRA
MMRNGKSTAGASNDMDSHGVKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATDD
EFRKKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFSDFEKGTKPF
KPLEQLMGVFPAASGNFLPTTWRALMTDPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALADVYPHLSPEEVRRNSLGSDVLFVGKSHPLCDFIRELYLAESHEVTEIPA
ELCHGIQGILNLDEDPILPDKPVESPIPTLRDISSNNAIGIKFKDPQFDDGFVFKAVILP
GAKIPNKVLKPGDWEQGNRGPWRPQLGFNPNRQQAHLDQSAFRKLNHYADRNQGAGLFGS
GPPQHRGGQYSNAPPPRNYHQGNYRPPQRDNYPQNQYARPPPMNAATASYPRFQHGSHGW
DRAMQSQSTAYEQNQQRGQGGWRPPQNQQDSRRGGQQQGFGQGYGLPPPSRRYNWN
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcgtttttccgctggttgagtcggaagtatccgtcaataatagtacac
tgtcttgaggagaaggccaaggagtacaatggcattaaaatcccagttgataccagcaaa
cccaatccaaatgaagtggagtttgacaacctgtatctggacatgaatggaattattcat
ccgtgcacacatccagaggacaagccagcacctaaaaatgaagacgaaatgatggttgcc
attttcgaatatatagaccgtctctttaacatcgttcgaccgagacgggttctgtacatg
gcaatcgatggcgtggctcctcgtgccaaaatgaaccagcaacgctcaagacgcttccgg
gcgtctaaagaaggagtggagcttgtagaggagaaaaagaaaatgagggaagaagttatt
cagagaggtggttacctgccatccgaggaaataaaagaacgttttgacagtaactgtatc
acccctgggaccgaattcatggataatttggccaaatgtttgcgatattacatcgcagac
agactgaccaatgaccctggatggcgcaatatcacagttttcttgtcagatgccagtgtt
cccggagaaggagagcataaaattatggacttcatcagaagacagagagctcagccaaat
catgacccaaacacgcatcactgtctctgtggagctgatgctgatttgatcatgttgggt
ttggcgacacatgaacccaactttaccattataagagaagagtttaaacccaacaaaccc
agaccctgtgccctgtgtagtcagatgggccacgagatcaaagattgtcagggactggcc
cgagaaaaacagggcgagcatgatgaatttgcagacacagttccaggatcagaacaggag
ttcatattcatccgactgattgtgttacgagagtatctggagagggagttaacaatggcc
agcctgccgttcccattcaacttcgagcggagtgtcgatgactgggtgttcatgtgtttc
tttgtgggaaacgacttcttgccccatttaccgtctcttgagatcagagagggcgccatc
gatcgtctggttggcatctacaaagatgttgtgcataaaaccggaggctacttgacagaa
aacggctttgtcaatctcgagcgtgtcgagctcattatgcaagccgtaggggtggcagag
gacaacatcttcaaaaagcgcaaagacgatgacgagagttttaaacggagaatgaaggaa
aagaaaaaacgaatgaaagcagaccagcgtccatcatttgtccctggtggccagtttgcc
cctcaggctctgggcggcagagacagacccatggcagtgcaaaacgccagacaagctgca
tatgaaatgaggatgcagggaaatcagcgcaatcaggaagcagctcagtccttgagagcc
atgatgagaaatgggaagagtactgctggagccagtaatgacatggatagtcatggtgtg
aaacgtaaagctgaggacagtgacagtgaaccggaaccagaagataatgtcaggttatgg
gaggatggctggaaacagcgttactacaaaaccaaatttgacgtggatgcgacagatgat
gagtttcgaaagaaagtggtgcagtcgtatgtggagggcctgtgctgggtgctcaggtac
tactatcagggctgcgcgtcctggaagtggtattttccctttcattatgctccgtttgcc
tctgacttcaaagacatcaagggcatgttcagtgatttcgagaaagggaccaaaccgttc
aaacctctggagcagcttatgggtgtatttcctgctgccagtggaaacttcctgccaaca
acatggagagctttgatgacggacccagaatcctcaatcattgatttctaccctgatgat
ttcgccattgatttgaatgggaagaagtacgcctggcagggtgttgctttgttgccgttt
gtcgacgaacggaggttacgagcagcgttagcagacgtctaccctcatttgtccccagag
gaggtgagaaggaacagtctaggaagtgatgtcctgtttgtggggaagtcccaccccctt
tgtgatttcatccgggaactctaccttgcagaatctcatgaggtcactgagatccctgca
gaactttgccatggaatccaaggtatattaaatctagatgaagaccctattctaccagat
aaaccagtggagtcaccgatcccaacactgagagacatcagcagcaacaatgctattgga
atcaaattcaaggatccgcagttcgatgatggttttgtgttcaaggctgttatcctacca
ggggcaaagatccctaacaaggttcttaaaccgggtgattgggagcagggtaaccgcggc
ccgtggagacctcaactgggatttaacccaaaccgccaacaagcccatctggaccaatca
gctttcagaaagctcaaccactatgcggacagaaatcaaggggcgggtctgtttggctcc
ggcccacctcagcataggggcggtcagtacagcaatgccccgccccccagaaactatcac
caaggaaactaccgtccaccccaaagagacaactaccctcaaaaccagtatgccagaccg
cctccaatgaacgctgccactgcatcgtatcccaggttccagcatggatctcacggttgg
gatcgggccatgcagtcccagagcaccgcgtacgagcagaaccagcagagaggacaagga
ggatggagaccccctcaaaaccagcaggacagccgcagaggaggacaacagcaggggttt
ggacagggttatgggttgcctccaccatcacgacgctacaactggaactga
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