Onychostoma macrolepis: 131527545
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Entry
131527545 CDS
T09350
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
omc
Onychostoma macrolepis
Pathway
omc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131527545 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131527545 (cpsf2)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
131527545 (cpsf2)
U7-dependent histone pre-mRNA processing factors
131527545 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
131527545
NCBI-ProteinID:
XP_058612707
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Position
20:29322702..29341528
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AA seq
787 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSLKRYTHQVDAVLL
SHPDHLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLETISRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLSRVPSPKVVLCSQPDLEAGFSRELFIQWCQDAKNSVILTYRTT
PGTLGRYLIDNPGEKRIELEIRKRCRLEGRELEEYMEKEKMKKEAAKKLEQAKEVDMDSS
DESDLDDDLEQPAVVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRPEEFLVPELQATEEEKSKLESGLTNGEEPMEQDLSDVPTKCTSTTQTLDIRARVMYID
YEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVEKVDTGVVAEMGDAKEETED
GEPAMDVTPDLTTEPSTAANQRAMKTLFGEDDREISEESDVIPTLEPLPTNEVPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEAGRICLEGCYCDDYYRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgacggctctttctggagtccaggaggaatcggctctatgt
tacctgttacaggtggatgagttccgcttcctgctggactgtggctgggatgaaagtttc
tccatggacatcatagattccctgaagcggtatacccatcaggtggatgcagtgctgctc
tctcaccccgatcatctgcatctgggtgctttaccgtacgctgtgggcaagctggggctc
aactgcaccatctacgccaccatccccgtctacaagatgggccagatgttcatgtacgat
ctctatcagtctcgacacaacacagaagatttcactctgttcacactggatgacgtcgat
tcagcttttgacaaaatccagcagctgaaatactctcagattgtcaacctgaaaggaaaa
ggtcacggtctgtccatcacaccacttcctgcgggccacatgatcggtggcactatctgg
aaaatagtgaaggacggagaggaggagatcatctatgctgtggatttcaaccacaagagg
gagattcatctgaacggctgctccctggagaccatcagcagaccgtctctcctcatcaca
gactccttcaacgcctcgtacgttcagcctcgcaggaaacaacgtgacgagcaactgctc
accaatgtcatggagaccctccgcggcgacgggaacgtgctgatcgccgtggatacggct
ggacgagtgctggaactggctcagctcctggatcagatctggaggaccaaagatgcagga
ttgggcgtttactcgctcgccctgctcaacaacgtcagctacaacgtggtggagttctca
aagtcccaggtcgagtggatgagcgataaactgatgcgatgcttcgaggacaagaggaac
aacccttttcagttccgccacctgtcgctctgtcacagcctgtccgatctgtcccgtgtg
cccagcccgaaggtggttctgtgcagccaacccgatctggaggccggcttctcacgggag
ctcttcatacagtggtgccaggatgccaagaactcagtcatcctcacctacaggaccaca
ccgggaactctgggccgctacctcatagacaacccgggggagaagaggatcgagctggag
ataagaaaacgttgccgactggaaggacgagaactagaggaatacatggagaaagagaaa
atgaagaaagaggctgccaaaaaactggagcaggcaaaagaggtggacatggactcgagc
gatgagagcgatttggacgatgatctggagcagccggcggtggtgaagaccaaacatcac
gacctgatgatgaagggcgagggcgggaggaagggcagcttcttcaaacaggccaaaaag
tcctaccccatgttccctacacatgaggagcgaatcaaatgggacgagtacggcgaaatc
atcaggcccgaggagtttctggttccagagctccaggccacagaagaagagaagagcaaa
ctggagtctggattgactaacggagaggagccgatggagcaggacctgtccgacgttccc
accaaatgcaccagcaccacacaaacgctagacatcagagctcgagtcatgtacatcgat
tacgagggccgttctgacggggactccattaagaagatcataaaccagatgaaacccaga
cagctaatcatcgttcacgggccgcctgaggccagccaggacctggccgagtcctgcaag
gccttcagcggaaaagacatcaaagtttacacgccaaaactgcaggagacggtggacgcc
accagcgagacccacatttaccaggtcagactgaaggactcgttggtcagttcgctgcag
ttctgtaaagccaaagacacagagctggcctggatcgatggcgttctggacatgcgggtg
gagaaagtggacacgggtgtcgtcgcagagatgggagacgccaaagaggagacagaggac
ggagagccggccatggatgtcacgccggacctgacgactgagcccagcaccgctgctaac
cagcgggccatgaagactctgtttggagaggacgaccgggagatttcagaggagagcgac
gtcattcccacgctggagccgctgcctactaatgaggtcccgggtcatcagtctgtgttc
atcaacgagcctcgcctgtcggactttaagcaggttctgctgcgtgaagggatccaggcc
gagtttgtgggcggagttctggtgtgtaataatctggtggctgtcaggaggacggaagcg
ggccgcatttgtctagaaggctgctattgtgatgactactacaggattcgtgagctgttg
tatcagcagtacgctgtagtttaa
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