Onychostoma macrolepis: 131528259
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Entry
131528259 CDS
T09350
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
omc
Onychostoma macrolepis
Pathway
omc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131528259 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omc03021
]
131528259 (pcf11)
03019 Messenger RNA biogenesis [BR:
omc03019
]
131528259 (pcf11)
Transcription machinery [BR:
omc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131528259 (pcf11)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131528259 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
131528259
NCBI-ProteinID:
XP_058613276
LinkDB
All DBs
Position
21:complement(15521704..15530416)
Genome browser
AA seq
1462 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPAG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPAPQPPAPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPTVSSNHHVGAPARFNISPQVTHT
VPAPQTKPWLPAPSEKMATRDPRLNRLGTTVNAKEQVMHKKESQITPSFPTTSEKRGQVS
AERQSKLEKLRIPKKDSSAVEDKPKSKSVSPSGKGILVKPRGMETEHSKTAEVNKKDPRL
HKQMHDRTDSKDEDVREKKRSSEKKDRDEGVKNLDIQKSISTRGKLINGSLNKHERLETF
LKQEIKVNKANVRKRSRSRSRSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHSH
NDDAFPQLSLRDERSAKKSAPELRRSKRPLDDRAADQKDGPQLRISPAEHKDTKDSKRWR
SGWEENKHPKQSDSDVSHGRLGNQRHKTWNTNQRPSTPRTTKQHRLSVDSNIQIPEALNS
ASKRDLLRKASKRHADGEISSDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYQSKK
KQQGAISDAELSYLEHKSKLRRTQLQRPVQKEGQSPLDELFYQPPHEMTEQYSESSVVHK
MSGDAVKPDREDPRRTNRPPSCTGSTFRNSPSPVNLDGTCGKSTGPPFDRSSSPVEMDQQ
PGDISPRFESPNSVHSGTGPDDGPINVEVLPMKDLFLEQGRSGRNHDESPGNTPTHSSEG
SIAQVNPTRHDGPNISQRFDRYKGSQAPFDGPPSHMREPRLDGPPRPYAPPPRYEGSTGG
FDGSGPPVRFSAHRFDAPHRFERFPKAHERPVRFNNPPVSHRPMRYTEPHNIVRFDPQTP
IHYDQPMHQNRFVNPQRFDNPHMQHGPQGYEEPRFPARIMTYDDQQGAARFDSPSGGMHF
ENPVQPEPLRFDAPPVMPRFDPQVPPRYCGPNIPNQLRPQEPAMYTQTQSQAPVINPTVP
PPNFNMTPMNTYSGPAQQFPMQQNVSQASNFNVTGPSSSDFQGSFRPAPFLGPGVGNVPQ
PMIGAQPFMPPNQISFQPGSQFQQPEPEPLRQIDVNDLLSKLLSTGIIKPAQTDSTTDST
SASQTLSVPEEEEEEEQEEDESVPDLTGFVLEDMKLRHDSIITKLYTGIQCYSCGMRFTA
SQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKV
HEEVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEK
TYHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDEVSCSSVKEEPSEDDTDA
PTVKEEVQVKLEGESQTSAIIF
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtatcagtcctcgctggaggat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcactagatgttcgtgtgaactcaatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaacccaaaatttttaaaaccgact
gaagaaacatctccgaagcctcctgcaccacaacctccagctccgagcttgacacaagaa
caattgataaggcaacagttgcttgcaaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgaacaaacaaaagctcaattggctgccagtcctactgtttct
tcaaaccaccatgtcggtgctcctgcacgtttcaatatctcaccacaagtcactcataca
gttcctgctccacagaccaaaccatggcttccagctccatcggaaaaaatggcaaccaga
gatcctagattaaacagacttggtacaactgtaaatgcaaaggaacaagtaatgcataag
aaggagagtcagatcacaccaagttttccaactacatcagaaaaaagaggacaagtctca
gctgaaagacagagtaagttggagaagttgaggattccaaaaaaggatagctctgcagtt
gaggacaagcctaaatctaagtctgtgtcaccatctgggaaaggtatccttgtcaaaccc
agaggaatggagactgagcattcaaaaactgctgaagtgaataaaaaggacccaaggtta
cataagcagatgcatgacagaacagattcaaaagatgaagatgtccgagagaagaaaaga
agttcagagaagaaagatagggatgaaggtgtcaaaaacttggatattcagaagtccatc
agcaccaggggcaagcttataaatggctctctaaacaagcatgaaagacttgagacattt
ctgaaacaagaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaagatca
cgttccccaccgttgcattctcccaaaagaaaagagaggcgatcatctccaaagagaaaa
accaggagtatcactccaccccccaagtctggaaaggctaggataagtaaacattcacat
aatgatgatgcttttccacagttgagtcttagagatgaacgaagtgccaagaaaagtgct
ccagaactaagacgatcaaaaaggccacttgatgatagagctgctgatcagaaagatgga
ccacagctgagaatttctcctgcagagcataaagacacaaaagatagcaagagatggagg
agtggatgggaagagaataaacatcccaaacagtcagattcagatgtctcacatggacga
ctaggcaaccagagacacaagacttggaacactaatcaaagaccgtccacacctcgtaca
actaaacagcatcgcttgagtgttgatagcaacatacaaataccagaagcacttaattct
gcaagtaaacgggaccttttaagaaaggctagcaaaagacatgccgatggtgaaatatcc
agtgacgaattcctcaatgtagcccatcaaataaaccaactttttcagtatcaagaggaa
agacagcggtctgactcttgggatgaatcgtgtgatgagggagtatatcagtcaaaaaag
aaacaacaaggagccatttctgatgcagagctttcctatcttgagcataaatctaagttg
agaagaacacagcttcagcgtccagtgcaaaaagagggccagtcacctttggatgaattg
ttctatcagcctccgcatgaaatgaccgaacaatacagtgaaagctcagtagtgcataaa
atgtctggtgacgccgtaaagcctgaccgtgaagatcctagaagaaccaacaggcctcca
tcatgtacaggttccacattcagaaattcaccaagtccagtcaacttagacgggacctgt
ggaaaatccacgggaccgccatttgatcggtcatcatctccagttgaaatggatcaacaa
ccaggagacatcagcccacgttttgaaagtcccaacagtgtgcactctggtacaggtcca
gatgatggtcctataaatgtagaggttcttccaatgaaagatcttttcttggaacaggga
agaagcggacgaaaccatgatgaatcacctgggaatacaccaacgcactcctcagaagga
tctattgcacaggtgaacccgacacggcatgatggaccaaatatttctcaacgatttgat
agatataagggttctcaagctccctttgatgggccacctagccacatgagagagccaaga
ttagatggtcctccaagaccttatgctcctcctcctcggtatgaaggtagtacaggggga
tttgatgggtctggtccacccgtaaggttttctgcacatcgctttgatgcccctcaccga
tttgaaagatttcccaaagcccatgaaagacctgtgagatttaacaacccaccagtatca
cacaggccaatgaggtacacagagcctcacaacatagtgagatttgaccctcaaacccca
attcattatgaccaaccaatgcaccaaaacagatttgttaatccacagaggttcgataat
cctcacatgcaacatggtccacaaggatacgaggaaccacggttccctgctagaattatg
acttatgatgatcagcagggcgcagctagatttgatagtccatcaggtgggatgcacttt
gagaacccagtacagcctgaacccttaagatttgatgcaccgcctgtcatgccaagattt
gacccacaagttcctccaagatactgtggtccaaacattccaaaccagctgaggccacag
gagccagcaatgtacactcaaactcaaagtcaggctcctgtgataaaccctactgtacca
ccacctaatttcaacatgacacccatgaacacatatagtggcccagcccaacagtttccc
atgcagcaaaatgtttctcaagcatctaacttcaatgtgacaggcccttcgtcatcagat
ttccagggttcatttagacctgctccattccttggtccaggtgttggaaatgttcctcag
cctatgattggagctcaacccttcatgccaccaaaccaaatatctttccagcctggttcc
cagtttcagcagcctgagcccgagccattgaggcaaatagatgtgaacgatctgttatca
aaacttctatccactggaataataaaacctgcacaaacagactcaacgactgactctact
tcagcaagtcagactttatctgtgcctgaagaggaagaggaggaggaacaagaggaagac
gaaagtgtcccagacctgactggctttgttttggaggacatgaaactgagacacgacagc
attatcaccaaactgtatacaggaatacagtgctattcctgtggcatgcgttttactgca
tctcagacggatgtgtatgcagatcatttggactggcactacaggcagaatcgttcagag
aaggacatcagtaagaaagttacacaccgtcggtggtactacagtctgacggattggatt
gaatttgaggaaatcgctgatcttgaggagagggcaaagagtcagttctttgaaaaagtt
catgaagaggttgtgcagaaaactcaggaagcagccaaagagagagagttccagagcgta
aaggctgctgcagacgttgttcacgagctgtgtgagatttgccaggagcagtttgagatg
tactgggaggaggaagaggaagaatggcacctgaagaatgccatcagagtcgatgaaaag
acgtatcatccgtcatgttacgaagactacaaaaatacatcctcctttgtggactgcaca
ccctcccccaataaaatgcttacagaaaacccattaacagctttcataaaacaagagcag
ggtgatgaggtgtcatgctccagtgttaaagaagagccctccgaggacgatacggatgca
ccaacggtaaaagaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaatt
attttctaa
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integrated database retrieval system
