Onychostoma macrolepis: 131528798
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Entry
131528798 CDS
T09350
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
omc
Onychostoma macrolepis
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omc03021
]
131528798 (setx)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131528798 (setx)
5.6.2.5 RNA 5'-3' helicase
131528798 (setx)
Transcription machinery [BR:
omc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131528798 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
Viral_helicase1
AAA_22
AAA_16
ResIII
NAT10_TcmA_helicase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
131528798
NCBI-ProteinID:
XP_058614160
LinkDB
All DBs
Position
21:complement(26976488..26998564)
Genome browser
AA seq
2334 aa
AA seq
DB search
MEKCLWCTTSLEAEGDAAIVAMLHRYSSGRLSESEMDSLNEDLGCCLECVVEYHRARDQV
PELHKHLWEMEKARLVRLLGTALDKELEEDDIFIIEDDHEEPVSKISPAEFHDRLRFPLF
EVLKYPYLLCYRDLCDLVVKALCKLQDMKQSLTVFEKYQGIYLLLVHPNEQVRRWAIDTA
KTMKSVDRDAYYDLQEIFFCMFYVIELGISLDFPDLTQESYAGGVIQMLPSHLYDSQNKK
NYWLGICMLLTQLSAEAMDSLFMGQFNIPLCILNTMDGLKNEDNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPNTAFQTITGAASYVAEIRNIRQKTMGGMVKVEPEYDDNMVTCSQMV
YDCYASEKPNQASGSSSNSGVSSNYVIYEDMQSLVTVLDSEMGQSMRVYGSTFLWFIPFV
CSIMELPELNASYISEVIHYLCDKIRENRHMLTGQTSACDKVTEFFTRILIQIVELHSTE
GRMGILSRCALKWVGEIVLCIIQSNEMHGPPDRMGGLHGVSSTSYNHGIVGRLPASGGGF
SAIIAGCMKLIRLLLKEGIKRSVPSATQFFNLLNKQLRGVTNKRWNLTRSESDELQKCLL
KIVRSMPERPASPHSVVPPPCAPSVEAATNTVISRNSVPTLNQQQHEDQEAGPSRAGDES
VIIKEEPIWNYRNWNLDEEVCSGLEVIIKAKKEPLDPVSVSQLRPVVQLECIKPDLGKVQ
EIRSRLNNQNLSKIKAIAKQKPSQSLKSAKEECGFRAEEEEEEEEEDDDEPLNIKRVRLT
KSIHKVESSDSEVDSAVGKTRNRSMGTSKENVESSTIVISDDSDNDERPNDILRSPKDRV
LSESPGRDYDDLSESQVFEFETQQYVASAWDDSDFNASDMAKKPKADQLLKPQVDEAPHE
ASPSSSETELIPDEDIERACQQAEDKIREQQQPQQPVDSCASSLSKASSTAESWDKFAKP
KPVKSTNTTPSDKKKPKKPLIIDALAQKIRHHPWKRSSTSQDAEEPSSSTSPSSCGISSS
SPYFSAPGSRNTPAIVPPKKVRKVAEPESTAERLGLKKKERKAFELSQRSLDCVAKLRCH
GQKVQVEPQQKTKRVRRATKTSPQKSIVKGNKKLLGSQDIQFFRQSREKHQRPATGAITT
LAPKPAKINQPVEVHLPKPTVASSEAGDIVPCPQPDPDHQQDNEKAASGTNYKGDGAGNN
KRIESKYFQASETAEVNMEKGKPTLEDDDEWMFLTQMEPTDMELCSQTEQFEEENGEELF
LTQRDPIDMDIDTDSEPDTPGPTLTPEPIPTPIVGSDDHLFVKPGMSPMSQKKAKPSTTK
IYTPSSRSASLVLEMEKGAKPPPVVKAKIPRLPPAMPPPKTFQPLRPPQLPKPLPSQHAP
HVPKLVTSSKISSTSEPPSYKVYQRPEAPVNKPVPTVDQSQTFDLSILTQAILKWEYRML
DNYKAFGSPHDLCQLPLKKVPVQFPSYLEYFNTLYPLLLVNAFEEMASEWLKEGRVKLNL
TVQGIEYSNRTASASFTANISPETNTKQLYPKEDDLVLLWLPDNTGSYAHDEPNLHEPHP
YFGYVSRSSVSNRGPGSRPILNLTIQTRGNVSSVNSQPVLCEVIGSLISIFREFRALCLL
RNRPMLRPLLAPHASYFTHTLDSPPDLDSPEFNRDQARAIACGLAMIKRTQKTPKFLLIH
GPPGTGKSKTIGGLLYKLLSSGTNSAAPSGNLQSKSRRTRVLLCAPSNAAIDSLMKKVIL
IFKEKCRNINAPQGNCGDINLVRLGSERTISKSLKPFSLDHQTKARAQRAQQTVDSDIHR
RKEQLDQSIENLSQRCAKTKKDSFEFKKLMEQKIQLLKEREGLSRQIKECRSRRQESQAL
VLQNAHVICCTLSTSGSIVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRSPAVI
LVGDPNQLPPTVVSQKAKEFGYDQSLMARLCKSLYQSLSTILLLSVQYRMHPDICEFPSK
YIYNSALKDDWQGQCRQYDREQTTMTESELRLLRSLRGQCVCETAQKRCSHSWPFKPYKV
FDVTDGIEKKERDSFSNHKEVKLVLLLLKLLGEKQSVRVGVITPYNAQKQRILEAVRGSG
IDNKQLQVDVDTVDGFQGREMDCIIVSCVRASSEMGSIGFVGNRQRMNVTITRARFSLFI
LGHIRTLREQSDWGALIEDAKMRKTIIKTMQKDFERDARQILKQEREPPTRSLSYPPIRN
PSTVTSPLTHASVETDPAPTPRPQRDTSNLPMPRLIPLECPNNPRMSDRPTDPRFAERRP
IREQRPEGDGRGLPESRHPTNRANSYEADSRSTGHSSRYSSKHRGSSPSRRHRR
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgcaccacctcactggaggcggagggtgacgcagcgatagtc
gccatgctgcatcgctacagttcaggacggttgtctgagagcgagatggactccctgaat
gaagacctaggctgctgtctggagtgtgtggtggagtaccatcgagccagagaccaggtc
cctgagctgcacaagcatttgtgggaaatggagaaggctcgacttgtgcgtttgttggga
actgctctggataaggagctggaggaggacgatatctttattattgaagatgatcacgag
gagccggtgtcgaagatctcgcctgcagaattccacgaccgtctccgtttcccactgttt
gaagttctgaagtatccgtacttgctttgctaccgtgatctgtgtgatttggtggtaaag
gccttgtgtaagttgcaggatatgaagcagtctttgactgtgttcgaaaagtatcaagga
atatatctgcttctcgttcatcccaacgaacaggtgcgccgctgggcaatcgatacagca
aagaccatgaagagtgtggaccgggacgcctactatgaccttcaagagattttcttctgc
atgttttatgtcattgagcttggaatatctttggactttccagatttgacgcaagagtct
tatgcagggggcgtcatacaaatgcttccctctcacctctatgattcgcaaaacaagaag
aactactggctaggtatctgtatgttactaacgcagctcagtgcggaggcaatggactct
ctgttcatgggacagtttaacatcccactttgcatactcaacacaatggatgggttgaaa
aatgaggataacccagcttctgacccattctggccagccctccactgttttatggtaatt
ttggaccgacttggttctaaaatctggggtcaggttgaccctaatacagcattccagaca
atcaccggagcagccagctatgttgcggaaattaggaacatccggcaaaaaaccatgggc
gggatggttaaagtggaacctgaatatgatgacaatatggtgacctgcagtcagatggtg
tatgactgttatgcctcagaaaagccaaaccaagcatctggttcgtcgtccaacagtggc
gtttccagcaactatgtgatctatgaggatatgcagtccctggtcaccgtgcttgattct
gaaatgggccagagcatgcgtgtatacggaagcacttttctgtggttcattccatttgtc
tgttccataatggaacttccagagctcaacgcttcctatattagtgaagtcatccactat
ctttgtgacaagatacgagaaaatcggcacatgctaaccggacagacaagtgcgtgcgat
aaagtgacggagttcttcactcgtatccttattcaaattgttgagctacactctactgaa
ggacgaatgggaatactttctcgctgtgccctcaagtgggtgggagagattgtcttgtgc
atcatccaatcaaatgaaatgcatggaccaccagacaggatgggtgggcttcacggagtc
agttcaacctcatacaaccatgggatagttggaagactgcctgcatctggaggaggcttt
agtgccataattgctggctgcatgaaactgattcgactgttgctgaaagaagggataaag
agatctgtcccaagcgcgacccaattttttaatttgcttaacaagcagttgcgtggagtt
acaaataaacgatggaatctgacacgttctgaatctgatgagcttcagaagtgtttgtta
aaaattgtccggtcgatgccagaaagacctgcttctccacactctgttgttccaccccca
tgtgcaccatcagtggaggcagctacaaacactgttatttccagaaattcagtgccaacc
ctaaatcaacaacaacacgaggaccaggaggcaggtccgagcagagcaggagatgaatct
gttattatcaaagaggagccaatttggaattatagaaattggaacttggatgaggaagtc
tgcagcggtcttgaggttatcataaaggctaagaaggaaccccttgacccagtgtcagtt
tcacagttgagaccagttgttcagttggaatgcattaaaccagatctgggaaaagtgcag
gaaattcgatccagattaaataaccagaatttgtcaaagatcaaagccattgccaaacaa
aagcctagtcagtccttaaaatcagctaaagaggaatgtggttttagagctgaggaggag
gaggaggaggaggaggaggatgacgatgaaccccttaatatcaaacgggttcgtctgaca
aaatctatccacaaagttgaatctagtgactccgaagttgacagtgctgttggaaaaact
cgtaacaggtccatgggcacctcaaaggaaaatgtggagtccagtaccattgttatctct
gatgattctgataatgatgaaaggccaaatgacatcctgaggtctccaaaagatcgtgtc
ttgtctgagagccctggtcgtgattatgatgatctcagtgaatcacaggtctttgagttt
gagacccagcaatatgtggcatctgcctgggatgattcagattttaatgcgtcagacatg
gcgaagaagcccaaagcagaccaactactcaaaccacaggtggatgaagctcctcatgaa
gcatctccatcaagttcagaaactgaactaattccagatgaagacattgagagggcttgt
cagcaagcagaagataagatcagagaacagcagcagccacaacagccagtggattcatgt
gcatcgtcactgtccaaagcatccagtactgcagaaagctgggataaatttgccaaacca
aaaccagttaaaagcacaaacacaactccatctgataagaaaaagccgaaaaagccactg
ataattgatgcccttgctcaaaaaatcaggcaccacccctggaaacgcagctccacatct
caggacgcagaggaaccttcctcttcaacttctccatcctcatgtggtatatcatcttcc
tctccttatttttctgcccctggttcacgtaatacccctgcgattgttcccccaaagaag
gtgcgtaaggttgctgagccagaatcaacagcagagcgtttgggattaaaaaagaaggaa
aggaaagcatttgaactttctcagcgctccctggattgtgttgctaaactgaggtgccat
ggccagaaagtgcaggtggaaccacaacagaagacaaagcgagtgcgtcgagccactaaa
acttctccacagaaatctattgtaaaaggcaacaagaaacttctgggatcacaagatatt
cagtttttcaggcaaagtcgtgagaagcatcagaggccagcaacaggagccatcacgaca
ttagctcccaaaccagcaaagatcaatcagccggttgaagtgcacttaccgaaacctaca
gttgcaagcagcgaggctggcgatatcgttccctgtcctcagccagatcctgaccatcag
caggataatgaaaaggctgcatcaggaaccaattataaaggtgatggggctggaaataat
aagagaatagaatcaaagtacttccaagccagtgagaccgctgaagtcaacatggaaaaa
ggaaaacctactctggaggatgatgacgaatggatgttcctcactcagatggaacccacc
gacatggaactgtgctctcaaacggagcagtttgaggaagaaaatggtgaagaactcttt
cttactcagagagatcctattgacatggacattgatacagatagtgagccagatacccca
gggccaaccttgacacctgaacctattccgactcctattgttggaagtgacgatcatttg
ttcgtgaagcctggaatgtcacctatgtctcagaaaaaggccaaaccttctaccacaaaa
atatacacccccagctcccgcagtgcctcgcttgtccttgaaatggaaaaaggagctaag
cctcctcctgttgtgaaagcgaagattccccgactgcccccagcaatgccacctccaaaa
acatttcaacctcttcgtcctccacaactcccaaagccacttccttcacaacatgctcca
catgttcccaagttggtcaccagttctaaaataagctccacctcggagccaccatcttac
aaggtataccaaagacctgaggctccagttaacaaaccagtacccacggtggatcaaagc
cagacgtttgacctttcaatcttgacccaagcaatccttaaatgggaatataggatgctt
gacaactacaaagcatttgggagtccacatgatctgtgccaactgccgctgaagaaagtg
ccagttcagtttcctagctatctggagtacttcaacaccttgtaccccctgctgctagtt
aatgcatttgaagagatggcgagtgaatggctcaaagagggcagagtcaagcttaaccta
acagtccagggtatagaatacagcaatcgcacagctagtgccagcttcacagcaaacatt
tctccggaaactaatacaaaacaactgtacccaaaagaagatgaccttgtgctactttgg
ttgcctgacaacactgggtcatatgcccatgacgaacctaatttacatgaaccacatcct
tattttggttatgtgtctcggtccagtgtgtccaacagaggtccaggttccaggccaatt
ctaaacttgacgattcagacacgtggtaatgtatcttcggtgaattcccaacctgtgctc
tgtgaagtcattggatcattgatcagcatattccgggaatttcgtgcactgtgtttgctg
cgaaatagaccaatgttgcgtcctcttcttgcgccacacgcgtcttatttcacgcacact
ctggatagcccaccggacctggattcaccagagttcaacagggaccaagcaagagcaata
gcttgcggtcttgccatgatcaagagaacacagaagaccccaaaatttctccttattcat
ggtcctccaggaaccgggaagagtaaaacaattggtggcctgttgtacaaactactatct
tcgggcactaacagtgctgctccttctgggaaccttcaatccaagtctcgacggacacga
gttcttctctgtgctccctctaacgctgccatcgacagtctgatgaagaaagtcattttg
atctttaaagagaaatgccgaaacatcaacgcacctcaaggtaactgcggtgatataaac
ctggtacgattgggaagtgaaaggaccatctcgaagtccctaaaacctttcagcctcgac
caccagactaaagctagagcacagcgagcccagcaaactgtagactctgacatacaccgg
cggaaggagcaactggaccaaagtattgaaaatctctcccagcgatgtgctaaaaccaag
aaggattcttttgagttcaagaagttgatggagcagaagatacagcttctgaaagagagg
gaaggactgagtcggcagattaaagagtgtcgcagcaggcggcaggagagtcaagctctt
gtgctgcaaaacgctcatgtgatctgctgcacgctcagcaccagtggaagtattgtcctc
gagaatgccttccgtcgtctgggacatgaaccatttagctgcgtcatcatcgatgaggct
agtcaggctaaagaaactgagactctgattcccatgctgtaccgaagtcctgctgtaatc
cttgtcggtgatcccaaccagcttccaccaacagttgtctctcagaaagcaaaggagttt
ggctacgatcagtctcttatggcaaggttatgcaaaagtctttatcagtctttatctacc
atcctccttctcagcgtgcagtaccgcatgcacccggacatctgtgaattcccctccaag
tacatctacaacagcgctcttaaggatgactggcaggggcagtgcaggcagtatgatcgg
gagcagacgactatgaccgagtctgaattaagactcctcaggtcactgagaggacagtgc
gtgtgtgagaccgctcagaaacgctgttcacacagctggcccttcaagccctacaaagtg
ttcgacgtgactgatgggatagagaaaaaggagagagattcattttccaatcacaaagaa
gtcaagctggtcttgctgctgttgaagctgctgggtgagaagcagtccgtgcgagtgggt
gtcatcacgccctacaacgcccagaaacaacgcatactggaagccgtcaggggttcaggc
atcgacaacaagcaacttcaggttgacgtcgatacagtcgatggctttcagggcagagaa
atggactgcatcattgtgtcttgtgtgagagccagcagtgaaatgggctccattgggttt
gttggaaatcggcagagaatgaatgtaaccatcaccagagccagatttagtctcttcata
ctgggacatatacgcacactcagggaacaaagtgattggggagcactgattgaggacgct
aagatgcgtaaaactatcatcaaaacaatgcaaaaagattttgaaagggacgccaggcag
attcttaaacaagaacgagagccaccaacccgcagtctctcctatcccccaatcaggaat
ccaagcactgtgacctcaccgcttacgcatgcatctgtggaaacagaccctgcccctaca
ccccgccctcaacgtgacacgagcaatctgcctatgccacggctaatacctttggaatgc
cctaataacccacggatgagcgacaggcccacagacccacgttttgcagagcgccggcca
atcagagaacagagaccagaaggagatgggcggggcttaccggagtcccgccaccccact
aacagagctaattcgtatgaagctgactctagaagtactggccattcttccagatactct
tcaaaacaccgtggttcttcaccatcaagacgacacaggagataa
DBGET
integrated database retrieval system
