Onychostoma macrolepis: 131531198
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Entry
131531198 CDS
T09350
Symbol
rc3h1a
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-1a
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
omc
Onychostoma macrolepis
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omc03000
]
131531198 (rc3h1a)
04121 Ubiquitin system [BR:
omc04121
]
131531198 (rc3h1a)
Transcription factors [BR:
omc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
131531198 (rc3h1a)
Ubiquitin system [BR:
omc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131531198 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
Prok-RING_4
zf-C3HC4
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
Baculo_IE-1
FYVE
zf-RING_4
zf-C3HC4_2
Ribosomal_S4
Motif
Other DBs
NCBI-GeneID:
131531198
NCBI-ProteinID:
XP_058617773
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All DBs
Position
22:18058926..18091402
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AA seq
1079 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEESHRKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IEQLPVNTALLQLVSGQIPKPPPLTLLTAAEDVKHYEESRTCVEDLALYLKPLSNTRGAG
LNGAAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLAKGLEAVRTVVHGLVDFIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLGMRRQLSQSLTQLNEMDLGAGLLPDEG
LSMEGLPRKHSSITNVILATGPDSSLAHLVSRGSDPSYDPTHKPGKMDSGSLSAPGSPPD
SLESIPKPGMLINSHSRVAGDGAVGQKHMPAVPRVPHMYSPHQSERYYSDTRGPLPAQYE
SSQYPAGNPYPHHHVHPRYARHPAPDPGMTPYLDSYSSSYTSERQCANPSSHYNYPSHHD
ARRHSAYAHPQTFPPREELVRRSPDVPPPLPPQNASYLTEPDNYNRSSQIRNYPRNAYTR
PQPSLDYLHRRRQEIMAQLEERKVASPSPFSSSHSYDPSYPQDMRGQSHYMEDNSHNFGH
FREPDYAGSYSPWSCDTFGSYIGGKDIKSKEGMNAMDTQNIDKGKSLRAHGLELQRRAAD
VKDDDPIIPFGSLPTVSRFGAISRTSKPGYPPNSPMPPLPNSAKHTASAADYTYANHSGW
SGDSYQPHQTSQGHFSERSSLPPAVQAREQLRMELQQVNLQISQQTQSRGLEQNPSSVMS
QPSRVDWSSGNLSSEQLSLELHQVERDIVMRTXEMAMENHDGKYKRVSVENGQDEHTLQR
DEHPLTLSEGSNGSMGLVQDCGLVSSSMSSLTSKTSSLSLSSEQVASSPDLPKNGVVHS
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaagccccgcaatggaccgagtttctgttgtgtcccatctgcacgcaaacc
ttcgaggagagccaccgcaagcccatcagcttgggctgcggccacaccgtgtgcaaaatg
tgcctgaacaaactgcaccgcaaggcctgcccgttcgaccagaccaccatcagcacggac
atcgagcagctgcccgtcaacacagcgctgttgcagctcgtcagcggtcagattcccaaa
cctccccccctcaccttactgacagctgcagaggacgtcaagcactatgaggagtctcgc
acatgtgtggaggacctggccctatatctcaaacccctgagcaacaccagaggtgcaggg
ctgaatggcgccgctcagagcgttctcagcagacccatgcagaggaagctggtgactctg
gttcactgccagctggtggaggaggagggccgcatccgggccatgcgggcggcccggtct
ctgggtgaacgtactgtcactgagctcatcctccagcaccagaacccccagcagctctcc
tccaacctgtgggccgctgtcagagccagaggctgccagtttctcggccctgctatgcag
gaagaagcattgaagctggtcctgctcgctctggaagatggttcggccctctcacgaaag
gttctggtcctgtttgtggtccagagactcgaaccacgttttcctcaggcctcaaaaaca
agcataggacacgtggtgcaactcctctacagggcctcctgctttaaggtgaccaaacgt
gacgaagattcctccttgatgcagctgaaggaggagtttcgcacatacgaggctcttcgg
agggaacacgactctcagatcgttcagatcgcgatggagggcggactgcgtattgcccct
gaccagtggtcatctctactgtacggcgaccagtcgcacaaatcccacatgcagtccatc
atagacaagctgcagactccagcatcctttgctcagagtgtgcaggaactcaccatcgcc
cttcagagaactggagatccagccaatctcaaccgcctcagaccccatctggagctgctg
gccgacatcgaccccagcccagatgcccctgcgcccacatgggagcagctagccaaaggg
ctggaagcggtgcggactgtcgttcacggcctggtggatttcatccagaaccacagcaaa
aaaggaggggatcagcagcagccacctcagcacagcaaatacaagacctatatgtgtcgg
gacatgaaacaaaaaggcggctgtcctcgcggagcaagttgcaccttcgctcactctcag
gaagagcttgaaaagtaccgtaagatgaataaacgtttgggaatgaggcgacagctcagt
cagtccctgacccagctgaacgagatggacctcggcgccggtctgttgcctgacgaggga
ctgtcgatggagggactcccacgtaaacactcctccatcactaacgtcatcctagctaca
ggacctgattccagcttggcccacctggtttccagaggctcggacccatcatatgaccca
acacacaaaccagggaagatggactctgggagcctcagtgcacctggctcacctccagac
tcattggaatccatcccaaaaccagggatgctcataaattcccactccagggtggcgggc
gatggcgcagttggacagaagcacatgcctgcggtgcctagagttcctcacatgtactca
ccacaccagtctgaacggtattactccgacacaagaggccctctgccagcccaatatgaa
tcctctcaataccctgcaggtaatccttaccctcaccaccatgtgcacccacgctacgcc
cgtcaccccgctccagatccaggcatgacaccatatctggactcctattccagctcctac
acctcagagcgccagtgtgccaaccccagctcccattacaattacccttcacaccatgat
gcccgtcgccactcagcctacgcccatccccagacattccccccacgagaggaactggtg
cgaaggagtccggacgttcccccgccactacctccccaaaacgcttcatacctgacagaa
ccagacaactataaccgctccagtcagatcaggaattacccgagaaatgcctacacacga
cctcagccctccctagactacctgcaccgcagaagacaggagatcatggcccagctggag
gagagaaaggtggcttccccttcgcccttcagctcctcacactcatacgaccccagttac
cctcaggacatgagggggcagagccattacatggaagacaactcccacaattttggacac
ttccgggaaccggactatgctggctcatattcgccttggtcatgtgacacctttgggtct
tatattggcggcaaggatataaagtccaaagagggcatgaacgccatggacacacaaaat
atagacaaaggcaaaagtctgagagcacacggcttggagcttcagcgcagagcggcagat
gtcaaagacgacgaccccatcattccctttggctctctgccgaccgtgtctcgttttgga
gccatctcgcgcacgtctaaaccgggctacccgccaaacagtcccatgccacccttgcca
aactcagccaagcacaccgcttcagctgctgactacacctatgcgaatcacagcgggtgg
agtggcgactcctaccagccacaccaaacgtctcaggggcacttcagcgagcgatccagt
ttaccccctgccgtgcaggcgcgtgagcagctgaggatggagctacagcaggtcaacctg
caaatcagccaacagacgcagagccgcggcctggagcagaacccgagctcagtcatgtcc
cagccgtctcgagtggactggtcgtctgggaatttgtccagtgaacagctgagtctcgag
ctgcaccaggtggagagagatatcgtcatgaggacanaagagatggccatggagaaccac
gatggcaagtataagcgggtctcagtcgaaaatggacaagacgaacacactttgcaacga
gatgaacatccactcactcttagtgagggttcaaacggctccatgggtttggtccaggac
tgcggtctcgtcagcagcagcatgtcctcgttgaccagcaagacgtcatctctcagtttg
tcctccgaacaggtggccagcagccctgatctgcccaagaacggagtcgtccactcctag
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