Onychostoma macrolepis: 131531885
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Entry
131531885 CDS
T09350
Symbol
pdzrn3a
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
omc
Onychostoma macrolepis
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omc04121
]
131531885 (pdzrn3a)
Enzymes [BR:
omc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131531885 (pdzrn3a)
Ubiquitin system [BR:
omc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
131531885 (pdzrn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
RING_XB3-XBAT31
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
131531885
NCBI-ProteinID:
XP_058619025
LinkDB
All DBs
Position
23:complement(21813331..21839163)
Genome browser
AA seq
1041 aa
AA seq
DB search
MGFDLDRFEGPVDPDLICKLCGKVLEDPLSTPCGHVFCAACALQWLSKVSSCPVQCQKIS
TKELNHVLPLKNLILKLDIKCDHRERGCNRVMKLQHLPEHAETCEFSPVRCGNEGCDAVL
SLKDVASHMREGCERRAVEVCKDGCGLALTLKERAEDHSCLQALKTHSGLLQTKVLSLEK
ELKRQSLSFSKRERSLLSKLSALHCELHITALTFQKKITEYKSRIDALSNSWMPLDKGEE
TRSLKVTLHRTSGSLGFSIIGGRLCGEPELHGDFSDGIYVSKIVENGAADKAGLHVHDRI
IEVNGRSLSVTTHDQAVEAFQTAKDPIEVQVLRRTEHKTCKTLKPARGMDNSTQTNITLK
TSKHIETLAKSPSPSTPHMALLDSFHSPSQYQMARCDSPYPSDFHDGVQKDNESRGLEYE
EVDLQRKTTQDKLGLKLCYTMDDEKSAIYISEIDPEGIAAKDGRIQEGDQIIQINGMDIQ
SHEEAVKLLTKVESRNVTFLVARPESQDVGWLEEDRNILVDDLHMGTPEQKHHKVKEFTT
SMLQQSTNEEDGGTTDTATLLSNQHEKDSGVGRTDESTRNDESSEQDNLGDDLNSLCDTL
PESHKKYNYNQDTVESGDMHLSNDSFLSVDNGDSGNFLGIPGTAFERFRKLLELKSLVNG
NSLQGFLEHDATLYGKGVNVDCDDQEIQMLNEELLNIELECLSIIQAHRLQAEGGDQQAK
KPSAKHFFEQVHQDLINNQVDNEGSTSAYNTGESCWSLHPTLEPDSLESQRMVAGDKGKG
SPMHRRNSTTACSKHNLSPIQEISPTKSLPGDAEVTNQGKRKQSKKKNPRKSFLTSLRHS
SYKSAYIPAHAQHYQSYMQLIQQKSAVEYAQSQVSLTSLCKNAETNPTESRPKTGWKVKI
RSDGTRYITKRPIRDQLLKERALRIREERCSATTDDDAASELKLGRYWNKEERKQHAARA
KEQRQRRELMKQCCLESKEQAGALDDKKEPDIIQLSRKKMMKRRNKRIFDNWMTIQELLT
HGTMSTDGARLYNSFLSVTTV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgacctggaccgtttcgaaggtcccgtggatccggacctaatctgtaaactg
tgtgggaaagttttagaggatcctctcagcactccgtgcggacatgtcttctgcgccgcc
tgcgcgctccagtggctctccaaagtcagcagctgccctgtccagtgccagaagatctcc
accaaagagctgaaccacgtcctgccccttaaaaacctcattctcaagctggacatcaaa
tgcgaccaccgtgaacgaggctgcaaccgggtgatgaagctccagcatctgccagagcac
gcggagacctgcgaattctctccggtgagatgcgggaatgaaggatgcgacgcggtgctc
agcttgaaggatgtggcttcgcacatgcgggagggatgcgagcgcagggcggtggaggtc
tgtaaggatggatgtggactcgcgctgaccctcaaggagagggccgaggatcacagctgt
ctccaagctctcaagacacacagcggtctcctccaaaccaaagtgctgagtctggagaag
gagctgaagcgccagtcgctgagcttcagtaagagggagagatctctcctctccaaactc
tccgcgctccactgcgagctgcacatcacagcgctcacttttcagaagaaaatcaccgag
tacaagagcaggattgacgcgctgtcaaacagctggatgcccctcgataagggtgaagaa
acaagaagcctcaaagtcaccctccacagaacatcagggtctcttggattcagtatcatt
ggaggaagattgtgtggggaaccagagctgcatggggatttcagtgatggcatctatgta
tccaagatagtggaaaatggagcagctgacaaggccggactgcatgttcatgacaggatc
attgaggtaaatggaagaagcctttctgttaccacccatgaccaagcagtagaggctttc
caaactgccaaagaccctattgaggttcaggtactgcgcaggacagaacacaagacttgc
aagactcttaaaccagcccgaggaatggacaacagtactcagaccaacattacgctgaaa
acttcgaaacatatagagactttggccaagtcaccatcaccttcaacaccacatatggct
ttgctggacagtttccattcaccttcacagtatcaaatggcaagatgtgactcaccttac
ccctcagacttccatgacggtgtacagaaagacaatgagagtagaggactggaatatgag
gaggtggatctgcagaggaaaaccactcaggataagcttggcctgaagttatgttacacg
atggatgacgagaagtctgccatttatattagcgagattgatccagaaggaattgcagca
aaagatggcagaatccaggaaggagaccagattatacagatcaatggaatggacatccag
agccacgaggaggcagtgaaacttctgaccaaggtggagagcaggaatgtaaccttccta
gtggctcgaccagaaagtcaggatgttggctggttggaggaggataggaacatcttagta
gatgacttgcacatgggcacaccggagcagaaacatcacaaggtcaaggagttcactaca
agtatgctgcagcagagcacaaatgaagaagatggaggcactacagatacggctacttta
ctatccaaccagcatgagaaagacagcggcgtaggccgcactgatgaaagcactcgtaat
gatgaaagctcagagcaggacaacttgggggatgacctgaattccctctgtgacactctc
ccagaaagccacaagaagtacaactataatcaggacactgttgaaagtggagacatgcac
ttaagcaatgactccttcctttcggttgacaatggagatagtggaaacttccttggtata
cctggcacggcatttgaacgtttccggaaactgcttgaattgaaatctctggtgaatggt
aacagtcttcagggatttctggagcatgatgccacactgtatggaaagggggttaatgta
gactgtgatgatcaggagattcagatgcttaacgaggagttgctgaacattgagctggaa
tgcctgagtatcatacaagcacacaggcttcaggctgaaggtggtgatcagcaagccaaa
aaacctagtgccaagcacttttttgagcaagtccatcaggacctcatcaataaccaagtg
gacaacgaaggctccactagtgcttacaacactggagagagctgctggagtttacatcct
actctggaaccagattctcttgaatcccaaaggatggttgctggagacaagggtaaaggt
tctcccatgcatagacgcaactcaacaacagcatgctccaaacataacctctctcccatt
caggagatcagccctaccaagagtttacctggagatgcagaggttacaaatcaggggaaa
agaaagcagagtaagaaaaagaacccaaggaagagttttttgacatccttgcgtcattcc
tcatacaagagcgcctacatcccagcccatgcacaacattaccaaagctacatgcaactt
atccagcagaagtcagctgtggaatatgcccagagtcaagtcagcttaaccagcctgtgc
aagaacgcagaaaccaaccccactgagtccaggcccaagacgggatggaaggtaaagatc
cgtagcgatggaacaaggtacatcaccaaaaggcccatcagggaccagcttctgaaggag
cgagctttgcgcattcgagaagagcgctgcagcgcaactacagatgacgacgcagcaagc
gaactaaaactgggtagatactggaacaaggaggagcgcaaacagcatgcggcacgtgcc
aaagaacagcgtcagcggcgggaactcatgaagcagtgctgcctagagagcaaagaacaa
gcaggagcactggacgacaagaaggagcctgatattatccagcttagccgtaaaaagatg
atgaagaggaggaacaagagaatatttgacaattggatgaccattcaggagttgctgaca
catggcacaatgtccacagatggtgcaagactatataattcctttctttctgtgactaca
gtataa
DBGET
integrated database retrieval system
