Onychostoma macrolepis: 131532638
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Entry
131532638 CDS
T09350
Symbol
col15a1b
Name
(RefSeq) collagen, type XV, alpha 1b isoform X1
KO
K08135
collagen type XV alpha
Organism
omc
Onychostoma macrolepis
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
omc00535
]
131532638 (col15a1b)
Proteoglycans [BR:
omc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
131532638 (col15a1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
131532638
NCBI-ProteinID:
XP_058620456
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Position
02:complement(16216492..16259615)
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AA seq
1279 aa
AA seq
DB search
MLKLLRKMKLWLLSWLIGAHLALSYRSSALLVMEERGSKGHLVLTELVGVPLPPSVSFIT
GYEGFPAYNFGPNANVGRLTQSFVPEPFFMDFSIIVTVKPSNSRGGVLFAITDPSQRIVH
LGLALTPVEDKTQRIVLYYSEPGLPDTMEVASFKVPDMTQQWNRFTLTVEHEEVRLYMDC
EEYHSAPLKRSQQPLSFKQGSGIFVANAGSTGLERFVGSIQQLVIKPDPRAAEEQCEEDD
PSLQASGDRSGDGDYDDEEEHGRHEVIFGQTNVREDKEKTHRPTYPVQAPPTVSPDMDEG
EFSGHVTPIDERLLRGTYKTDETGESTGDGSGQGQKGERGEPGSAGPPGPPGPPGPSLPP
THSGQPGQRGPQGPMGPPGRQGRPGKDGQSGRKGEEGKPGQRGPPGLPGLPGESGVKGEK
GDSGVGLPGPPGPPGPAGPSKPIKVPYGFDALGSGFEDVDIDTERLRGPPGPPGPPGKPG
PSGPNGPLGALLPGPPGTPGKDGRDGQPGLRGLPGPDGLTGQQGPKGAKGEQGTRGPSGP
KGENGDSGLIGPMGPRGVPGPPGIPGPPGPPGPLSNNFMMDTLKDLESSGESGLFLGAGI
SKGYLGPPGLPGPPGSQGLPGADGAPGLSVKGEPGSPGQDGIPGLAGLPGARGPKGDKGS
PGEKGERGRDGLSITGPPGPPGPPGPTINLQDLLLNDTAAKLNLTKIRGPPGPMGPEGLP
GRAGFPGPRGPKGEIGFPGIQGPPGLKGEKGEPGVSIAADGSVIPGLRGPRGPKGMKGDI
GLSGRPGIVGPIGPPGQKGEYGLPGRPGRAGIAGRKGDKGDSSGPPGPPGPPGPPGPPGR
VIGLNGTVFPVPPRPHCKIPVNNNNSQQGDGRASLGVKGDKGDVGNPGLPGTAVPLFPHG
YVGAKGDNGYKGQKGEKGDPGLPGPPGMPGRTGLVGPKGDSIVGPPGDTGSPGAPGQPGY
GIPGPQGPPGPPGPPGTLSAYGSAASLSGPPGPPGPPGAPGHGNPVRTYKNSQTLIRETS
QAAEGTLAFVIDKSELYIRVRGGWKKVELGELIPVPQDSSSSALTQGLSRPSDRSVPRVH
SQELKSFLPDYHAFLQNAHSMPALHLVALNAPFSGDMHGIRGADYQCYQQARARGLTSTY
RAFLSSHLQDLSSIVKKGDRFGLPVVNLKGDVLFSSWMAMFSGDGAVYDPLTPIYSFDGR
NVMTEQAWPQKLVWHGSNTMGIRMTTSYCEAWRTGDMAVTGQASLLQTGRLLGQHTRSCS
NHFIVLCIENSYIQNPGRN
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaactgctgaggaaaatgaaactttggctcctgtcgtggctcatcggtgcgcat
ctcgccttgagttatcgctcatctgcgcttcttgtgatggaagagcgagggtccaagggt
cacctagtcctgactgaactagttggtgttcctcttcctccatctgtgtccttcatcact
ggttacgagggtttccctgcttacaattttgggcctaatgctaatgtaggtcgactgacc
cagtcctttgtacctgagcccttcttcatggacttctccattattgtcaccgtcaagccc
tccaactctcgaggaggggttctgttcgccatcacagatccctcccagaggatcgtccac
ctgggcttggccctgacgcccgtagaggataagacccagaggattgtactgtattacagc
gagccagggcttccagacaccatggaggtggcttcctttaaagtgcctgatatgacacag
cagtggaaccgttttacgctgacggttgagcatgaggaggttcggctctatatggattgt
gaggagtaccacagcgcccctctgaagagaagccagcagcccctcagctttaagcaaggc
tcgggtatcttcgtagcaaacgcgggcagtactggcctggaaagatttgtggggtctatt
caacagctggtaataaaaccggaccctagggcagcggaagagcagtgtgaggaagatgac
cccagcttgcaggcctccggggacagaagcggtgatggtgattatgatgatgaagaagaa
catggtagacatgaagtaatattcggtcagacaaatgtgagagaagacaaagaaaagaca
catagacccacctatcctgtccaagctccgcccactgtgtcacctgacatggacgaaggg
gagttttcaggacatgtgacccctatagacgaaaggctgcttagagggacttacaaaaca
gatgaaacaggagagagtacaggggatggttccggccaggggcaaaaaggggagcgtgga
gaacctggatctgcaggccccccaggaccccccggacctcctggaccatctctcccaccc
acacattcaggtcagcctggacagagaggccctcaaggtccaatgggtccaccaggaaga
caaggcagaccagggaaagatggacaatctggacgcaaaggtgaagaaggaaaaccaggg
caaagaggacctccagggcttccaggattacctggagaatctggagtcaaaggagaaaag
ggtgattctggggttggtctgcctggtcccccagggcctcctggaccagcggggccatcc
aaaccaattaaagttccatatggatttgatgctctcggctctggatttgaagatgttgac
attgatacagaacgtcttagaggtccacctggtcctccagggcctccagggaaacctggc
ccctctggtccgaatggccccttaggggctttgctgccgggaccaccaggcacccctggc
aaggatggcagagatgggcaacctggacttcgtgggcttcctggtccggatggcttaact
ggacaacagggtcccaaaggagcaaagggtgaacaaggaacgagagggccctctggacct
aagggtgaaaatggtgactctggccttattggtccgatgggaccgaggggtgtacctgga
ccacctggcattcctggccctcctggcccaccaggacctttaagcaataacttcatgatg
gacactttgaaggatttggagagttctggtgaaagtggattgtttcttggagctggaatt
tcaaaaggctatcttgggcctcctggtctgcctggccctccaggatctcagggacttcct
ggtgctgatggagcccccggtttgtctgtaaagggtgaaccaggatcgccaggacaggat
ggaataccaggattagctggtttaccaggtgccaggggaccaaagggggacaagggcagt
ccaggagagaagggtgagcgaggtcgtgatggactgagcatcacagggcctcccggtccc
cctggcccacctggaccgaccattaacttacaggacctccttcttaatgatactgcagcc
aaactgaacctcactaagatcagaggacctccaggccctatgggccctgaaggcttgcct
ggcagagcaggattccctggcccaagaggaccaaaaggtgaaattgggtttcccggcatt
caaggacctccaggactgaagggagaaaagggggagccaggtgtatctatagctgctgat
ggttctgtaataccaggcctgagaggacccagaggaccgaagggaatgaagggagacatc
ggcctctctggacgtcctgggattgttgggccgattggaccgcctggacaaaaaggagaa
tatggacttcctggtagaccgggccgggctggaatagctggaaggaaaggggataaggga
gattctagtggtccccctggtccaccgggtccacctggacctccagggccaccaggacga
gtaattggtctcaatggaacagttttcccagttcctcctagaccacactgcaaaatacca
gtcaacaacaacaattcacaacaaggcgatggaagagcatcattaggagtcaaaggggac
aagggtgatgtgggaaatcctgggttgccaggaaccgcagtgcctttgtttcctcatggt
tatgtgggtgctaaaggtgataatggctacaaggggcaaaagggagaaaaaggcgatcca
ggtttgcctggcccaccagggatgcctgggaggacaggccttgtgggaccgaaaggtgac
tctattgtcggtcctcctggggacactggttccccgggtgctccaggacagcctggctat
ggaattccaggaccacaggggccaccaggacctcctggaccaccaggcactctgtccgca
tatggctctgctgcgagtctctctggacctccaggtcctccagggccgcctggtgctcct
ggccatggaaaccctgtgagaacatataaaaacagtcagaccttgataagagagaccagt
caggctgcagaagggactctggcatttgttatagacaagagtgaactgtacatcagggta
cgagggggctggaagaaagttgagctaggagagctaatcccagttcctcaagacagttcc
tcatctgctttgacacaaggcctgagcagacccagcgaccgcagtgtacctagagttcat
agccaggagttgaagagcttcctgccagactaccatgctttcctacagaatgcacattca
atgccagcattgcacttggtggcactcaatgccccgttctcaggggacatgcatggaatc
cgaggggcagattatcagtgttaccagcaagcccgtgccaggggcctaacatccacttac
agagctttcctctcctctcacctacaagacctttccagcatcgtcaagaaaggggaccgc
ttcggcttgccagtggtgaacctcaaaggagatgtgcttttcagcagctggatggctatg
ttctctggcgacggggctgtttatgatccactcactccgatttattcctttgatggtcga
aatgtcatgaccgagcaagcttggcctcagaaactggtgtggcacggctcgaataccatg
ggcatccgaatgacaactagctactgtgaggcctggcggacgggggacatggccgtgacg
ggacaggcgtctcttctgcagaccggcagactgctggggcagcacacgcgtagctgctca
aaccacttcattgtgctttgcattgagaacagctacatccagaaccctggaaggaactag
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