Onychostoma macrolepis: 131532663
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Entry
131532663 CDS
T09350
Name
(RefSeq) collagen alpha-1(XXIV) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
omc
Onychostoma macrolepis
Pathway
omc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
131532663
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omc00536
]
131532663
Glycosaminoglycan binding proteins [BR:
omc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131532663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
131532663
NCBI-ProteinID:
XP_058620489
LinkDB
All DBs
Position
23:complement(2777795..2887115)
Genome browser
AA seq
1677 aa
AA seq
DB search
MHLGAQRTRSGQISPTSTTRFLVLLLSTCAALLSAEEPSAAPGVDLIHQLGLSGRRDIHS
SGTTYLTSLASSLSILPPGVGVILGRDALIEAPSVDLLPAGVEEEFSIIVSLSSWRANNA
FIFSVRDGRDRLQFGLQLLPGRVVVYTGEKASIYFKYDVQDKHWHSFSVGVRPRSVSFHA
RCGAVQYGEETLTRPQTLSSEGRLSVGRMDSRAVQFEGALCQLDIYPSAQAAAHYCDYVK
KQCRLSDTFRSLSGSSESPFPSVSPSPKFHHSSSESHTFSPTLADHSTNSIPTALFDQFA
TTSSPMFRSSTPRHMNPSPRTFSKVQSLDLTPETSTSNPATENMLDGENDTENQPLLKKP
RATRATPDLITIVKQSRLKEALRNDGRSHQSNKELLQANPKVNSTILYREESSYNLVDQS
EEQVQEGVHDTGYSEGYGYDYGFEEDEYFFDYDGFVGPKGEPGPPGSIGPPGLPGPPGKR
GPRGSAGPHGSPGPHGLPGPKGAKGDPGLSPGQAPAGDKGERGRLGPQGPKGEPGPKGPK
GYPGPAGLPGEQGLPGLPGVSGAAGYPGRQGLAGPEGNPGPKGVNGFIGPPGVAGAPGLE
GERGIPGPVGIKGPKGRQGVVGDAGERGPPGPDGNEGPVGGTGSSGFPGLRGDPGPEGPR
GFPGIVGPQGLTGGVGPPGMKGDKGEPGLRGEPGETGYQGDKGTAGNPGPTGPRGKPGPL
GKTGDRGPQGPPGPPGPEGFPGDIGAPGPNGPLGPKGIQGARGPQGPPGPKGTEGDEGPP
GPPGKPGPTGRIGRKGFIGEPGPEGLKGEIGDPGNPGKHGPPGLVGLIGITGVIGQPGEK
GDRGPPGPLGPPGEKGSTGYPGLPGGPGDFGPQGPPGPQGPRGEAGVSGPKGRRGPRGPD
GPPGELGPEGVKGEKGSPGKNGAPGFIGKAGAPGKRGAAGAPGKAGPPGNTGEKGPPGEP
GSRGPPGDPGPDGEQGHEGPPGPEGEQGPVGEPGIKGEMGPVGEEGELGQPGIRGPPGPP
GEDGHQGKDGPKGEPGDHGPMGEAGERGEIGDPGPIGPPGDPGKKGFPGPEGKQGLPGNR
GRPGKKGEKGPPGHLGEMGSSGEIGQTGERGLKGARGTRGPAGRPGVMGPQGEPGLQGYT
GHTGKQGPAGLPGPKGEKGYPGEDSKTAGPPGPLGEPGASGEKGERGEPGDDGYQGHAGV
TGARGAIGQQGSPGSPGLPGEAGPIGEKGVQGLTGKKGSRGPAGAPGPEGPVGLPGPRGT
DGYPGSDGLPGLPGLPGLPGSKGRTGQRGDTGLEGRAGLPGPRGELGLPGVIGERGPAGS
KGEMGLAGDRGHGGAKGMEGAMGDQGVKGEQGAKGEPGEVGDAGMLGLQGFPGPKGPNGD
LGFTGIPGLKGPAGVLGFSGPVGPVGMIGPVGKPGARGHKGSRGEMGPQGPQGSPGPQGP
PGLPGPSIRIDMDVHELIKSSAHLELESYQNTDTSLSEQSAEIFRTLQYLSSVIDSMKTP
LGTRENPARFCRDLLDCRHKMSDGLFWIDPNVGCTSDAIQVFCNFTAGGQTCLNPATTDK
AAFDVGKVQMKFLHLLSITATQTVSLHCFSDPATVAMETPRALRFRGWSGQVFKENSSLS
PHVVLDDCEIRDGSWHQSRFLFQTQVTQQLPIVDIQGLHPSSPGDQRHVEVGPVCFL
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcccaacggacaaggagtggacaaatttctcccacatcgacaacgaga
ttcctcgtcctcctcctgtcaacatgtgcggcgctgctgtcagcagaagagccatcagca
gctccaggtgtagaccttattcatcagctgggcctttctggtcgcagagacatacattct
tccgggacaacttacctcacctcccttgcttcatctctgtccatcctgccccctggtgtt
ggggttatcctcggacgggatgccctcattgaggccccatctgtggacctgctccccgca
ggcgtggaggaggagttttctatcatagtgagtttaagctcctggcgagcgaacaatgcc
tttatttttagtgtgcgtgatggcagggacagactgcagtttggcttgcagctcctgcct
ggaagggtagtggtttacacaggtgagaaagcgtcgatctacttcaagtacgatgtgcaa
gataaacattggcactccttctctgtcggggtccggccacgctccgtatctttccatgca
cgctgcggggctgtgcagtacggcgaggaaacgctgacccgtccacagacattgagctct
gaaggccgcctctctgtgggaaggatggactccagggcggtgcagtttgaaggagcatta
tgccagctggatatttacccctctgcccaagctgcggcgcactactgcgactatgttaaa
aaacagtgcagactgtccgacaccttccgatctctgtcagggagctcagagtccccattc
ccatcagtttcaccttccccaaagttccaccacagctcttcggaatcacacacatttagc
ccaactcttgctgatcactccaccaactctattcccacagcactttttgaccagtttgca
accacaagctctccgatgtttcggtccagcacacctaggcacatgaacccatctccaaga
actttcagcaaggtgcaatccctggacctcactccagagacttccacaagcaaccccgca
acagagaatatgcttgacggtgaaaatgacactgagaatcagccacttctcaagaagccc
agagcaactcgggccaccccggacttgatcaccatcgtcaagcagagccgtttgaaagag
gccttgaggaatgatggtagatcccaccaatccaacaaagagcttctgcaggccaatcct
aaagtgaacagcaccattctgtaccgtgaagagagcagctacaaccttgtggaccaatct
gaggaacaggtccaggagggggtgcacgacacaggatactcggagggttacggatatgac
tatggttttgaagaggacgaatatttctttgactacgatggatttgttggtcctaaagga
gaaccgggtcctccaggttccatcggccccccaggtctccccggaccccctggaaagaga
ggaccacggggttcagctggtcctcacgggagtcccgggccacatggtttacctggtccg
aagggagcaaaaggtgatcctggactgtccccaggtcaagcgccagcaggtgataagggt
gaaagaggacggctgggtccacagggtcccaaaggtgaaccaggtccaaagggtcccaaa
ggctatccaggaccagcaggtctgcccggagaacagggtttgccaggattgccgggcgta
tctggggcggcaggttaccctggcaggcagggtttggcaggaccggagggaaaccctgga
cctaaaggtgtcaatggcttcatcggacctccaggagttgcaggagcaccaggactggag
ggagagagaggaattccgggtcctgtaggaatcaagggtcccaaaggaagacagggtgtt
gttggcgatgcgggtgagcgagggccgcccggaccggacggaaacgaggggcccgtcgga
ggaaccggcagcagtggattcccaggcctgagaggtgatccagggcccgagggaccccgc
ggctttcctggcattgtgggacctcagggcctgaccggaggggtggggcctcctggaatg
aaaggtgataagggtgaacctggattgaggggtgaaccgggagagactggctatcagggc
gacaaggggacggctggtaatccaggcccgacaggaccacgtggaaaaccaggacctctc
gggaaaacaggtgaccggggaccacaggggcctccggggccaccaggacctgagggtttc
ccaggagacattggtgcaccaggacccaacggccccctgggaccaaagggtattcaagga
gcccggggcccccagggaccaccagggccaaaaggaacagagggagacgaaggccccccg
ggtccacctggaaagcctggtcccactggacgaataggtcggaagggtttcatcggtgaa
ccaggacctgaaggactgaagggagaaattggtgacccagggaatcctgggaaacacggc
ccccctggtctggtgggactgattgggataaccggagtgatcggacaacctggagaaaag
ggtgatcgaggtcctcctggtcctttgggtcctccaggagagaaaggttcaacagggtat
ccgggtcttccaggaggtcctggggatttcggcccgcaaggtccacctggtccacaaggg
ccgagaggagaagcaggtgtttccgggccgaaaggacgaaggggcccgaggggacctgac
ggccctccaggagagctgggccctgagggcgtaaagggtgaaaaggggtcgccagggaaa
aatggtgctccgggattcatcggtaaagctggagctccagggaagagaggagcagcggga
gcgcctggtaaagcaggtcctcccggaaacacaggtgaaaaaggtcctccaggtgaacct
ggctccagaggccctccgggggacccaggaccagatggagagcaaggtcacgagggacct
ccaggacctgaaggagagcaggggcctgtgggtgaacctggaatcaagggtgaaatgggg
cctgtcggagaggagggtgaattgggccaaccgggcatcagaggtcctccagggccacct
ggagaggacgggcatcaagggaaggacggaccaaagggtgagccaggcgaccatggacca
atgggagaagcaggagaaaggggtgagattggtgaccctggcccaataggacctcctgga
gatcctgggaaaaagggcttcccaggacctgagggcaaacagggtctgccgggtaaccgt
ggacgtccaggaaagaagggtgaaaaagggccgccaggtcacttgggagaaatgggctca
tctggcgaaatcggacaaacgggggagagaggactcaaaggtgctcgaggaaccagagga
cccgcaggtcgaccaggagttatgggacctcagggagagccaggacttcaaggttacaca
ggtcacactggtaagcaaggtccagcaggcctcccagggccaaagggagaaaagggttac
ccaggagaagacagtaaaacagcaggaccacccgggcccttaggtgaaccaggcgcttca
ggagagaagggtgaacgtggggaaccaggagatgacggatatcagggtcacgcaggagtc
acaggtgcccgtggagcaatcggtcagcagggatctcctggatctccagggcttcctggt
gaagcaggacccataggcgagaagggagttcagggactcactgggaagaaaggatcccga
ggtcctgctggagctccaggccctgaaggtccggttggtttgccggggcccagagggaca
gatgggtatccgggatctgacgggcttcctggtcttcccggtttaccaggtctgcctgga
tccaaaggccgaacaggtcagcgcggtgataccggtctggaggggagggcgggacttcct
ggcccgcggggagagcttggacttcctggtgtcatcggagagagagggccagcggggtca
aagggtgagatgggtttggcgggtgacagaggacacgggggtgctaaaggcatggagggg
gcgatgggagaccagggcgtgaaaggagagcaaggtgccaaaggagagccaggtgaggtg
ggagacgcaggcatgctgggactccagggctttccgggacccaagggtccaaacggagat
ttggggttcactggtattcctggactcaaagggccggcgggagttctgggtttctctggt
cctgtaggtccggtgggtatgatcggtccggtggggaagcctggtgccaggggacacaaa
ggaagccgtggagagatggggcctcaggggccgcagggcagtccagggccacaggggcct
ccaggtttacccggcccgtcgatacgcatcgatatggacgttcacgagctgatcaagtcc
agtgcacatctagagctggagagttatcagaacacagacacgtctctgtcggagcagagc
gctgagatcttcaggacgctgcagtatctgagcagcgtcatcgacagcatgaaaacaccg
ctgggaacgagagaaaacccggcccgcttctgcagagacctgctggactgccgacacaag
atgagcgacggattgttctggatcgatccaaatgtgggctgcacgtctgacgccatccag
gtgttctgtaacttcaccgcaggaggacagacgtgcttaaaccccgctacaacggataag
gccgcgtttgatgtcgggaaagtccagatgaagttcttacacttgctgagcatcacggcg
acccagactgtttccctccactgcttcagtgacccggcgacagttgccatggagacgcct
cgagccctgcgtttccggggttggagcggccaggtgttcaaggaaaactcgtctctgagt
ccacacgtggttctggacgactgtgagatccgtgatggcagctggcatcagtcacgattc
ctgtttcaaacccaggtcactcagcagcttcccatcgtggacattcaaggtctccatccc
tcaagtccaggagaccagcggcacgtggaagtgggtcctgtttgcttcctgtga
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integrated database retrieval system
