Onychostoma macrolepis: 131533401
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Entry
131533401 CDS
T09350
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
omc
Onychostoma macrolepis
Pathway
omc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131533401 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omc03032
]
131533401 (topbp1)
03400 DNA repair and recombination proteins [BR:
omc03400
]
131533401 (topbp1)
DNA replication proteins [BR:
omc03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
131533401 (topbp1)
DNA repair and recombination proteins [BR:
omc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
131533401 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
131533401
NCBI-ProteinID:
XP_058621702
LinkDB
All DBs
Position
24:16736171..16763657
Genome browser
AA seq
1549 aa
AA seq
DB search
MSKVNKEAYIVKFIEHNGQKSDLALRAYKAIVELQSEKYVQTLDEEAALELDHNDKSLFV
FSDFTSTAFDHFRRLGCRIVSPLVVLFCLQKQRCVPKAEQPVYNMAMADVTVSCTNLDKE
ARSEVMDLIQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPIFLPSWVKACWEKS
QDSVFHHSELNAEDYQCPVLKGCTVCVTGLSTVERKEVQRLCEQNGGTYTGQLKMNECTH
LIVSEPTGQKYEFARKWNVYCVSMHWLFDSIEKGFCQDEGRYAVERGKKRAEENPGRPNT
STPTGPNRSKEEGPSLLGLSHISNISMNVNETALTTAGISHIETPDPVDSFDITVCRVDD
LLDGFKLYLCGLSGKKLEKLRRMVNSAGGLRFNQPSQELTHIVMGEPDQGVKVFLDKATH
RPHIVTVQWLLDSFSHGSLLPEDGYFHPSFLPPAPAAVDMPAPHKAAPRASRPSVAPPPA
PSPGRQARAEEDLLSQYMENDQTVVELPQATNSTSSRQSFLLPEPPPAVKDSTLVETSEG
LFAGKRFILVGFGAEAEAQLSELVMENSGKILVGRSRAVAHYAIVPLLGCDVEATVDEVA
TDTWLAMCVEQQCVLPLPSHPLFTPVAVRDGFSPLKGCVLSVSQFTGAERESLIQLAKHL
GASVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWGLPAVAIRWVLESARTGKRA
DEGRYLVDLPPSPERTEDSFIGASQKDPPPLRLLQRSPELPLLGPQNSAAITPLDTARFQ
SRTVRSAVRKLRQGEEEQVDVATPGQEEAKGALQKDSSLQLDTPSRFLSRDKLFGPSFNT
KDVFDHLQTPGNNPQQGQGAETPLSEVIERNLKAAVANSNRSHVTSLAAMTASPQLGKEP
EPEVEQKAAAPLSGVVVCVSKKLSKKQSELNAVAASLGADFRWSCDDSVTHYIYQGKVGD
NSKEYKAVKERGLHIVSQHWLQACADEQKHVSESLYPFTFNPKMSLTMSQVADSTQRSPP
PPTPRTRLRAFTENEETRLSPVDSITDISTPQRVSVGEPEKDQTISTERNLTETLEMRES
LQRQLQEIMSATKLTSGRRGSSRLARTGSGGLDSPHTPDSLGRIGRRSRTLEALRMSRQV
AVDLNTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSETLAIVPPPPSDHTARDS
MTDSELVEMAAFEVIDAQLKPKVTPPPADTLQNPETPEAPTLAFPTSKPVVPSLPQIEEK
EEVKDPPRFLLSSLNPQERIDYSHLIEELGGVVLEKQSFDPSCTHVIVGYPLRNEKYLAA
MAAGKWILHRSYLEACRAEGHFIEEEQYEWGSSSILDALPSINSQQKRLALAAMRWRKTL
QGSSNKEGAFGGWTVMLNIDQAREAGFRRLLQSGGAEVLPDPSPSLFKETTHLFVDFSRL
KPGDVRVDVSEAAAQGVKCLKPEYIADYLMQEPSPSMDAYYLPGAATDDLEKVQDTSSRK
RKASGEMSTLKKSRFLFDPRCNASLRKTSESCVHSNRSVSNGNKCTDFF
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagtcaacaaggaggcatacattgtgaaatttattgaacacaatggacagaag
agtgatctggctctccgggcctataaggcaatagtggaactgcagtctgagaaatatgtg
cagacgctggatgaggaagccgcactagagctggaccacaatgacaagtccctgtttgtt
ttcagtgacttcaccagcactgcctttgatcacttcaggaggctgggatgcaggatcgtg
agtcctctcgtagtgctgttttgtctgcagaagcagagatgtgtgcccaaagcagagcag
cccgtgtacaacatggccatggctgatgtcacggtctcctgcaccaaccttgacaaagag
gcacggagtgaagtgatggatcttatccagctgatgggtggacgggtctaccgtgatctc
aatgtgtctgttactcacctggtggcaggtgaagtggggagtaagaaatacctggtggct
gcaagccttgggaagcccatttttttgcccagctgggtgaaagcatgctgggaaaagtct
caggatagtgttttccatcactctgaactgaatgcggaggactatcagtgtccagtcctg
aaaggctgtacggtgtgtgtgactggactctctactgtggagcgtaaagaggttcagagg
ttgtgtgagcagaatggaggcacctacacggggcagctcaagatgaatgagtgtactcac
cttattgtcagtgaacccacaggtcagaaatatgagtttgcccgtaaatggaacgtatat
tgtgtgtccatgcactggctgtttgacagcatcgagaagggcttctgtcaggatgagggc
aggtatgccgtggagcgtggaaagaagagagcggaggagaatccaggcagacccaacacc
tccactccaacaggacccaacaggagcaaagaggaaggtccctcacttctgggattgagc
catatttccaatatcagtatgaatgtcaatgaaacagccctcaccacagcaggaatcagc
cacatagagactcctgatccagttgactcgtttgacattactgtttgtcgagttgatgac
ctgttggatggctttaagttatatctatgtggcttatcaggaaagaaactggagaaactg
cggcggatggtgaactctgccggagggctgcgcttcaaccagcccagccaagagctgaca
catatagtgatgggtgaaccagaccaaggggtcaaagtattccttgacaaagccactcac
agaccccatatagtgaccgtgcagtggttactggacagtttctcccatggttccttgctc
ccagaggatggctactttcacccctcctttctgccccctgccccagccgctgttgatatg
cctgctcctcacaaagctgccccccgtgcctccagaccctctgtagctccccctcctgcc
cctagtccaggccgacaagccagagcagaggaagacctgctatcacagtacatggagaat
gatcagactgtggtggagctgcctcaggccactaatagtaccagcagcaggcagagcttt
ttgcttccagagcctccacctgcagtgaaggactcaaccttggttgaaacctcagagggc
ctttttgcagggaagcgttttatcttggttggttttggagctgaggctgaagcgcagctc
tcagagctagtcatggaaaactctgggaagatcttggtcggccgctcgagagctgtggcg
cattatgccatcgtgccactgttgggctgtgatgtggaggctacagtagatgaggtcgcg
acagatacctggctggccatgtgtgtggagcagcagtgtgttttgccactaccttctcat
cctctgttcactccagtagcagtgagagacggcttctctcctctgaaaggctgtgtgctg
tctgtcagtcagttcactggagctgagcgagagtctcttattcagcttgccaaacacctg
ggggcaagtgttcaggattactttgtgcggactgctaatcaaagaaaaggaatgctggcc
agcactcatttggtactccagactcctgagggcacaaagtaccaggctgctcagaaatgg
ggtctacctgcagtcgcaatccgctgggttttagagtctgccagaacagggaagcgtgct
gatgaaggacgatacctggttgacctgcctccctcaccagagcgaactgaggacagtttt
atcggagcatctcagaaagacccgccaccactgcgcctccttcagcgctctccagagcta
ccactactaggtccacaaaatagtgctgccatcacccctctggacacggctcgctttcag
agccgcactgtccgctcagcagtcaggaagttgagacagggagaggaggagcaggtggat
gttgccaccccaggacaggaggaggccaaaggagccctgcagaaagactcttccctccaa
ctagacactccctctcggttcctgagcagagacaaactcttcggaccctcctttaacaca
aaggatgtgtttgaccatttgcagactcctggtaataatcctcagcaaggtcagggggct
gagactcctctgtcagaggtcattgagaggaaccttaaagctgcagttgccaacagcaat
cgcagtcatgtcacaagcctcgcagccatgactgccagtccacaactgggaaaagagcct
gaacctgaggtggagcagaaggctgcagctcctcttagtggggtggtggtgtgtgtaagc
aagaaattaagcaagaaacagagtgaactcaatgcagtggccgcctcactaggcgcagac
ttcaggtggtcgtgtgatgactctgtgactcactacatctaccagggtaaagtgggagac
aacagtaaagaatacaaagctgtcaaagagagaggactacatatagtgtcacaacactgg
ctacaggcttgtgcagatgagcagaagcatgtgtctgagtcactctacccttttacattc
aaccccaaaatgagcctcaccatgagtcaggtggcagatagcactcagaggtcacctcct
cctcccaccccccgcaccagactcagggcatttacagagaatgaggaaaccaggcttagt
cctgttgacagcatcacggacatctcaacccctcagcgtgtcagtgtgggagagcctgag
aaagatcagaccatcagcactgaaagaaatctcacagaaacacttgagatgagagagagt
cttcaaaggcaacttcaagagatcatgtctgctactaaactgaccagcggtcgtcgaggc
tcctcgcggttggccagaacaggctctgggggactagactcaccccacaccccggacagc
ctggggcgaataggaagacgcagccgtactttagaggccctacgaatgtcacgtcaagta
gctgtggacctgaacacagagccgtctcagagtgagcaaatcgtgtgggatgaccccaca
gcacgagaggagagagctaaactggctgataacctgcagtggcctggtagcccctcccag
cactctgaaaccctcgccatcgtcccaccgcccccctctgaccacacagccagggactcc
atgactgactctgaacttgtggaaatggctgcatttgaagtcattgatgcacagctgaag
ccaaaggtgaccccacctccagccgacacgctacagaaccctgaaacacctgaagcacct
actcttgcattccccacctctaaacctgtagttccttcccttccacagattgaagaaaaa
gaggaggtcaaggatcctccacgattcttgctgtcttcattgaacccacaggaacgcatc
gactacagtcatctcatagaagagctaggtggagttgtgctggagaagcagagttttgat
cccagctgcactcatgtgattgttggttatcctctgaggaatgagaagtatctggcagca
atggcagcaggcaagtggattcttcaccgctcatatttggaggcctgtcgtgcagaagga
cacttcatagaggaggagcagtacgagtggggcagcagctccatcctggacgctctgcca
tccatcaactctcagcagaagagactggcactggcagccatgcgatggaggaaaacacta
caaggcagctcaaacaaggagggtgcattcggcggctggactgtgatgctgaatattgac
caggccagagaggctggattcagacggctgctgcagtccgggggagccgaggtgttgcca
gacccttctccttcgctgtttaaagagacaactcacctctttgtggattttagtcggtta
aaaccaggtgacgtcagagtggatgtcagtgaagctgcagctcaaggggtcaaatgtcta
aaaccagagtacattgctgattacctcatgcaggagccttctccttcaatggatgcttac
tatcttcctggtgcagctacggatgatctagaaaaagttcaagatacatcttcacgcaaa
cggaaagcctctggggaaatgtccacattgaagaagagtcgtttcctgtttgacccccgg
tgtaatgcctccttacgaaagacatcagaatcatgtgtccacagcaaccgttccgtttct
aatggcaacaagtgcacagatttcttttga
DBGET
integrated database retrieval system
