Onychostoma macrolepis: 131539041
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Entry
131539041 CDS
T09350
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
omc
Onychostoma macrolepis
Pathway
omc03013
Nucleocytoplasmic transport
omc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131539041 (upf2)
03015 mRNA surveillance pathway
131539041 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131539041 (upf2)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131539041 (upf2)
mRNA cycle factors
P-body specific factors
131539041 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
131539041
NCBI-ProteinID:
XP_058629308
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All DBs
Position
04:34715018..34737692
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AA seq
1266 aa
AA seq
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MSSSMPAERKKSVNMEERETGSVSNKDRDADRPAATSRDKSKDETKMSGKKDGGKTADDK
KRRAEEDKRKKEEKERKKKEEEKQRAEEEQKKKEEEEKRQQEEQEKKLLEEEARRQKEEE
AAQLKEKEESEQLQQEAWERHHSRKELRAKNQHVQETRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRGSLSQDFDSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYVDFA
PLLLAAWKRHFEARKEEKSPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIST
DRETHTHVSVIISFCKHCGDDIAGLVPRKVKNAVEKFGLSFPPSQIINAEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLA
DLLDENMPELPQDKTIQEEHGPGIDIFTPGKPGEYDLDGGIWEDEDARNFYENMVDLKAF
VPAILFKDNEKGSQTSKEGREGNSTEELEMELEVLDITDDPIDLDTADETESEELAKKIL
DEQEQEDEEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRAL
FTVPRQRLDLLPFYARLVATLHPCMSDVADDLCSMLKGDFRFHIRKKDQINIETKNKTVR
FIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLL
EQMMRKKQAQHLDVRYVTMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVTT
EKVLRQMRKVPWQDPEVKSYLICCMINIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDG
VLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFTSFGVNTDGSPS
PLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYVWWKKSLDVWTKDQPF
PIDIEYMITDTLEMLRPKMKLCSSLDEACAQVTQLEREFLVKLGLEKDGRSSSAMGENEP
LDEEDDDDEDEGGAETEEQSGNESEMNEPEEEEGSDNEEEEREEEEENTDYLTDSNKENE
TDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLK
SQLKKSPAPSCTADADADISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQ
EERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFK
TGGRRR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcagtatgcctgctgagcgtaagaagtccgtcaacatggaggagagagagacg
ggctccgtcagcaacaaggacagagacgcagacagaccggccgccacgtctcgtgacaag
agcaaagacgagaccaagatgagcgggaagaaggacggaggcaagacggcggacgataag
aagagacgggctgaggaggacaagaggaagaaggaggagaaggagcgaaagaagaaagag
gaggagaagcagagggcagaggaggagcagaagaagaaagaggaggaggagaagagacag
caggaggagcaggagaagaagctcctggaggaggaggccaggcgacagaaagaggaagag
gctgcacagctcaaggaaaaggaggagtccgagcagcttcagcaggaggcgtgggagcgt
caccacagcaggaaggagctgcgagcgaagaaccagcacgtgcaggagacgcgtcccgag
gaggccttcttcagccgcctggactccagcctgaagaagaacacggcgttcgtcaagaag
ctccgcacgctcacggagcagcagcgcggctcgctgtcgcaggacttcgactctctcaac
ctcagcaagtacatcggcgaggccgtgagctccatggtggaggccaagctgaagatctca
gacgtgggctgcgccgtgcatctctgctccctgttccaccagcgctacgtcgatttcgca
ccgcttctcctcgccgcctggaagaggcacttcgaggccaggaaggaggagaagtcgccc
aacgtgagcaaactgcggaccgacctgcgcttcatcgccgagctcaccatcgtgggtctg
ttcacggataaagaagggctctcgctcatctacgagcagctgaagaacatcatcagcacc
gaccgagagacgcacactcatgtttccgtcatcatcagcttctgcaagcactgcggagac
gatatcgccgggctggtgccgcggaaggtcaagaacgcggtggagaagttcggcttgtcc
ttccctcccagtcagatcattaatgcggagaaacagcagccgttccagaacctgctgaga
gaatatttcacctccctcaccaaacacctgaagaaagaccaccgagagctgcagaacatc
gagagacagaacaggcgtatcctgcactctaaaggagagctcagcgaggacagacataag
cagtatgaggagtttgccacctcctatcagaagctgctggcaaacacgcaaacgctggcc
gatctgctggacgagaacatgcctgaacttcctcaggacaaaaccatccaggaagaacac
ggtccaggcatcgatatctttacgccggggaagccgggagagtacgatctggatggaggg
atctgggaggacgaggacgcgcggaacttctacgagaacatggtggatctgaaggcgttt
gtacctgcgatcctcttcaaggacaacgagaagggcagccaaaccagcaaagaaggacga
gagggaaacagcactgaggagttggagatggagttggaagtgctggacatcactgatgac
ccgatagatctggacacagctgacgagactgaaagtgaagaactggccaaaaagatactg
gacgagcaagagcaggaggatgaggaggccagcaccggctctcatcttaaactcatcgtg
gacgctttcatccagcagctcccaaactgcatcaacagagacctgattgacaaggctgct
atggacttctgtatgaacatgaacaccaagtccaatcgcaggaagttggttcgagctctt
ttcacggtgcccagacagaggctggatctgttgccgttctacgctcgtctggtggccact
ctgcacccgtgtatgtctgatgtagctgatgacctctgctcaatgctcaaaggagatttc
agatttcatatcagaaagaaggaccaaatcaacattgagaccaagaataagacggtaagg
ttcatcggggagttggccaagttcaagatgttttccaaaacggacacactgcactgcctc
aagatgctgctgtctgatttctctcaccatcatatcgagatggcctgcacactgctggag
acgtgtggacgctttctcttccgctcaccagaatctcacctgcgcacgagcgtcttactg
gagcaaatgatgcgtaagaaacaggctcagcatctggacgtgcgttacgtgacaatggtg
gagaacgcctattactactgcaacccgccgccgatggagaagacggtccgcaggaagagg
ccgccgctgcaggagtacatccgcaaactcctctacaaagacctgtccaaggtcaccact
gagaaggtgttgaggcagatgaggaaggtgccctggcaagatcctgaagtgaagagttac
ctgatctgctgtatgatcaacatctggaacgtcaagtacaacagcatccactgcgtggcc
aacctgctggccggactggtggcgtatcaggaggacgtgggcattcatgtggtggacggc
gtgctggaggacatccgcctcggcatggaggtgaaccagcccaagtttaaccagcggagg
atcagcagcgctaagtttctgggtgagctgtataactaccgtatggtggagtctgccgtt
atcttccgcacgctcttctccttcacctcgttcggcgtgaacacagacggctctcccagc
ccgctggacccccccgagcacctgttccgcatccgcttggtctgcaccctgctggacacc
tgcggacagtacttcgaccgcggctccagcaagaagaagctcgactgcttcctcatttac
ttccagaggtacgtctggtggaagaagagtctggatgtgtggactaaagatcagccgttc
cccatcgacatcgagtacatgatcacagacacgctggagatgctgcggcccaaaatgaag
ctgtgctcgtctctggatgaggcctgtgctcaagtcacacagctagagagagagttcctc
gtcaaactcggcctggagaaagacggccgctcctccagcgccatgggcgagaacgagcct
ctggatgaggaggatgatgatgatgaagacgagggaggagcggagaccgaggagcagtct
ggaaacgagagcgagatgaatgaacccgaggaggaggagggctcagacaacgaggaagag
gagcgtgaggaggaagaggagaacaccgactatctgaccgactccaacaaagagaacgaa
acggatgaggagaataacgaggtcactatccgcggcggaggactcaaacacgtggcgtgt
gccgaggacgaggacttcatccaggcgctggacaaaatgatgctggaaaacctgcagcag
cgcagtggagaggcagtgaaggtgcatcagctggatgtggccatacccctgcagttaaag
agccagctgaagaaaagccccgccccctcctgcaccgcagacgcagacgcagacattagc
gacaccatgcagttcgtcatgctcacgcgcaagggcaacaaacagcagtttaagatcctg
aacgtgccgctgtcgtctcatctggcggcgaatcacttcaaccagcagcaggcggagcag
gaggagcgcatgcgcatgaagaagctgacgctggacatcaacgagcggcaggagcaggag
gactatcaggagatgatgcagtcgctcgctcagagacccgctcccgcaaacaccaacaga
gagcgcaggccacgctaccagcaccccaaaggagcgcccaacgcagacctcatcttcaag
accggcggcaggagacgctga
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