Onychostoma macrolepis: 131540459
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Entry
131540459 CDS
T09350
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
omc
Onychostoma macrolepis
Pathway
omc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
131540459 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omc03400
]
131540459 (lig3)
Enzymes [BR:
omc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131540459 (lig3)
DNA repair and recombination proteins [BR:
omc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
131540459 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
131540459
NCBI-ProteinID:
XP_058631263
LinkDB
All DBs
Position
05:complement(25843052..25853330)
Genome browser
AA seq
1011 aa
AA seq
DB search
MPSLWLGRAVRTLSRSSLPKLCRETSFRATLNHQSLQCLRTLIFSWGFASSPSGIFFCVP
QIRQFSLSSSSYFHVSWPEWQSGRPVMAEQRYCVEYAKRGTAGCKKCKDKIMKGMVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITELEGWEELQDEDKELINKHV
SELAAKANATPKKKVQAKLNNSGQLSAPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPTQGSALSAQLCDLNHKDCLLREFRKLCALVAEKSSYNAKTEIIRDFLTKGSGGDKFRG
DLYLTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCSQDEMVQDLEQGDVSETVRMFFEDS
KSYPPAAKSLLTIQEVDASLSRLSQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDLK
INSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQDASNGTGPRKILSVEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGSHFSYFSRSLKPVLPHKVAHF
KDFIPQAFPGGQSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GVSLMDKPLCERRKFLRDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
IKGHYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESK
KWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLNIVKNYYPDFIIRDPKKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELFRISKENCDFEVT
AGPSKTSQNDKSSSGGESGGSSPSASHRASTANKTKNGHTPEAKAVKTESSSPAVKRKLP
AEKQDAKKIKTEPVHSNGQSKLKTVQTTDPKNEKTLLDIFTGVKLYLPESVRDFEKLRRY
YLAYDGDLVPDYDSASATHTLGEPEDDCSAQRVTSNWIWECIRKRRVVPPC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtctttggcttggcagggcagtgaggacactcagcagatcatctttgccaaaa
ctttgtagggaaacttcatttagagcaacactaaatcatcaatctctccagtgtttgagg
actcttatattttcgtggggctttgcatctagccccagtggcatctttttctgtgtgcca
caaattcgccagtttagtctcagctccagctcttatttccacgtttcttggcccgagtgg
caaagtggacgaccagtcatggcagagcagagatactgtgtggaatatgccaaacgtggc
acagctggctgcaagaaatgcaaagacaagatcatgaaggggatggtccggattggcaag
atagtgccaaacccattcagtgagtctgctggagaaatgaaggagtggtaccacgtgaaa
tgcatctttgagaagcttgagagagcacgtgccaccacgaagaaaatcgaagacatcaca
gaactggagggatgggaggaacttcaggatgaggataaagaactaataaataaacatgtt
tcagagctggctgccaaagccaatgcaaccccaaagaagaaagtgcaagcaaagttaaac
aacagtgggcagctgtcagcaccactagctgatccaacagtcaatgctcctcgcaagttt
tctggcttcacagctaccaaggccggttcctcttcctccagtcctggaccatctccagcc
aaacccactcagggtagcgccttatcagctcagctatgtgatctcaaccacaaagactgc
ttactgcgggagttccgcaaactttgtgccttagtcgcagagaagtccagctataacgcc
aagacagagatcatcagagacttcttgacaaaaggctctggtggagacaaattccgagga
gatttgtacctgacagtgaagcttctcctcccaggagtggttaagaatgtgtacaacctc
aatgacaaacaaattgtcaagcttttcagccgcatactgaattgcagtcaggatgagatg
gtgcaagacttggaacagggtgatgtttcagagacggtgcggatgtttttcgaagacagc
aagtcttatcctccagcagccaagagtctgcttactattcaggaggttgatgcttcactg
agccgtctgtcgcaactcacaaaggaggatgatcagcaggcagagctgcaggatattgct
aaaaaatgcaccggaaatgatctgaagtgttacattcgtttggtcaaacatgatctgaaa
atcaactctggggccaagcatgttttggatgctgtggaccccaatgcttatgatgccttt
aaagcctctcgtaacctgggtgacgtaattgaccgggtgctacggaaccagcaggatgct
tctaatgggacaggacccagaaagatcctcagtgtggaggcgtctctgatgacccctgta
cagccaatgctggcagaagcatgtaagtccattgagtatgccatgaagaaatgtcctaat
gggatgtattctgagatcaagtatgatggtgagcgtgtgcaggtccataagaacggcagt
cacttcagttacttcagtcgaagtctcaaaccagtactcccacacaaggtcgcccatttt
aaagatttcataccgcaggcatttcctggtggccaaagtatgatccttgatgctgaagtt
cttcttattgatacaaagactagcaaacccctgccttttgggactcttggagtacacaag
aaagcagcttttcaggacgctcaagtgggtctgttcgtgttcgactgcatttatttcaat
ggtgtcagtctcatggacaagcctctctgtgagagaagaaagtttctccgggacaatatg
gtggaagttcctaacaggattctgttctcagaaatgaagcatgtcacgagagctgctgat
ctggcagaaatgatcacacgtgtcatcagagaaggacttgagggtttggttcttaaagat
atcaagggacattatgaaccaggaaaacgtcactggttgaaggtgaagaaggactatctg
aatgaaggagcaatggcggacaccgctgacctcgtggtgcttggcgcgttctatggcaaa
ggctcaaatggtggaattatgtccagtttcctcatgggatgctatgacccagaatccaag
aagtggtgcactgtgaccaagtgttcaggaggctatgacgacgccaccttagccagactg
cagaaggagttggacgtcatcaaaattggcaaggatccaagcaagatcccaggatggttg
aacattgtcaagaactattacccagatttcattatccgagatccaaaaaaagcaccagtg
tgggaaataacaggagcggagttttccaaatcagaaatgcacactgcagatggcatatcc
atccgcttcccacgatgcactcgaatgcgagacgacaaagactggaagactgccactaac
cttcagcagctcaaggagctgtttcgtatttcaaaggagaactgtgattttgaggtgaca
gctggtccgtccaaaactagccaaaatgacaagagctcttcaggaggtgagagtggagga
agctctccctctgcatctcatagagcttccacagctaacaagaccaaaaacggtcatact
ccagaagcaaaggcagtgaaaacagaatcatcatctccagcagttaagaggaaactaccc
gcagagaaacaagatgccaagaagataaaaacagaacccgttcacagcaacggacaaagc
aaattgaagactgttcaaacaactgacccaaaaaacgaaaagacactactggacattttc
acaggtgtgaagctctacctcccagagtcagtgcgggactttgagaagcttcggcgctac
tacctagcatacgatggagatttggtgccagattatgactctgcttcagccacacataca
ctgggagagccagaggatgactgttcagcccagagggtcacctccaactggatttgggaa
tgcatccgaaagaggagggtggttcctccctgctga
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