Onychostoma macrolepis: 131541398
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Entry
131541398 CDS
T09350
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
omc
Onychostoma macrolepis
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omc03041
]
131541398 (ythdc2)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131541398 (ythdc2)
Spliceosome [BR:
omc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131541398 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
Ank
ATPase
nSTAND3
PhoH
AAA_22
Ank_4
AAA_16
ABC_tran
Ank_5
Motif
Other DBs
NCBI-GeneID:
131541398
NCBI-ProteinID:
XP_058633100
LinkDB
All DBs
Position
05:complement(44996265..45031484)
Genome browser
AA seq
1434 aa
AA seq
DB search
MRSRSTASVSILYRQKHKPLRISDRNRIKLSGFLTAVCFHRSVLLRYSKRGEMSRGGQRS
HTNASKQTASLKAKGLKDIRIDEEVKISVNIALERFQYSDEKELDFPSSLTNSERAFIHR
LAQSLGYVSKSRGKGSNRYLTVKKKDGTEASRSIMTCNLSHNSKHMVQSLLQRFPITHKE
RSELQPRTERAVFPSPDASDSKSRTSGRLSHGIPQVPQKRGPSELDCFRRALPVYERQEE
IIQTIRENQVVLVLGETGSGKTTQIPQFLLDDCCRSGIPCRIFCTQPRRLATIAVAERVA
AERGEKIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMSGDEALSTVTHVIVDEVHER
DGLTDFLLTKMKELVQKTPSLKLILSSATLDVNLFVRYFGDCPVIHIKGCPYEVKQLFLE
DILRTTGYTNKDMKKYKKEAQKEERQQTSLTEWCDARLDVSQPDAPREKTHTCVLQENDL
LDDGGDSVFSQMSEKDVATLEPWLLREMDACISNIFLNQDADAFVQLFNLILNENISVDY
RHSETSATPLMVSAGRGFLSQMEQLLSMGANVNIKASNGWTALDWAKHFSQTEAVDLLES
HIWCVESGQLDESSLVQTAASELNPEDQELLKAYHHSFDDEKVDLDVILHLLSSIYQSSD
EGAVLIFLPGYDEIVSLRDRILFDDKRFTDHQQRFQVFILHSSMQTSDQKKVLRNTPKGV
RKIILSTNIAETSITVNDVVFVIDSGKVKEKAYDALNNVTMLKMVWISKASALQRKGRAG
RCRPGICFHLFSRLRFNNMLEHQIPQLLRMPLQELCLHTKLLAPVTCPIAEFLSKAPEPP
HLHTIKHAVQMLKTIDAMDPWENLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIA
CTLAHRDPFVLPAQAAQKRAAMLCRKRFTANTFSDHMALLRAFQAWQKARSDGWERAFCE
KNFLSQATMEIIVGMRTQLLGQLRATGFVRARGGGDIRDVNQNSENWAVVKAALVTGMYP
NLIHVDRDSLSLMGSKEKKVRFHPTSVLSQPQYKKIPPANGQAAAVESLPTDWLIYDEMT
RAHRIASVRCCSVVTPLSVAIFAGSAKLPSSALQEPAVHRGADAVNDSSDSEVEDRSSAR
LAHISIDDWLHFKLHGETAELLFGLRQRWQSLFLRRIRSPSKSCSQLDEATIRALVSVLS
AEEQSAGLQQPTGIGQRPRPMTADDPLQTPAGRSAAEHQELEERSSPDRPRLASQLKNHR
ALHSKHLGDENGPVKSADGPSSPSSGARCSSPSSRLLRSSVRYFIMKSSNMRNIDLSQQR
GIWSTTPNNEHKLTRAFVESSAVFLVFSVQGSGHFQGYARMASAVSGERCLDWGSAGLGG
VFGVEWIRKDSLPFQLTQQLLNPWNDNKRVQISRDAQEVEPQTGSQLLQLWERI
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagccggagcaccgcgtcagtttcgattctctaccgacagaaacacaaaccgctt
cgcatcagtgacagaaaccgaatcaaactctccggattcctcacagcggtctgctttcac
cggtctgttctcctcagatactccaaacgcggagaaatgtcacgcggaggtcagagatca
cacacaaacgcctctaaacagacggcttctctgaaagccaaaggactcaaagacatcagg
atcgatgaagaagtcaaaatctctgtaaatatcgctctggagaggttccagtacagcgac
gagaaagagctggatttcccttcttcattgacaaattctgagagagcgttcatacatcgg
ctcgctcagtccctgggttatgtctcaaaaagcagagggaaaggctccaatcgatatctc
acagtaaagaagaaggacgggacggaggcgtctcgctccatcatgacctgtaacctctct
cacaactccaaacacatggtgcagagccttctgcagaggttccccatcacccacaaagag
cgcagtgaactacagccgcgcacagagagagccgtcttcccttcccctgacgccagcgac
agtaaaagcaggaccagcggtcgtctgagtcacggtattcctcaggttcctcagaaacgt
ggcccgtctgaactggactgtttccggagagcgctgcccgtatatgaacgccaggaggag
atcatacaaaccatcagggagaaccaggtggtgctggttttgggtgagactggctcaggc
aaaaccacacagatcccacagttcctgctggacgactgctgtcggagcgggattccctgc
cggatcttctgcactcagcccaggagactggccaccatcgctgtggcggagcgcgtggcg
gctgagcgcggcgagaagatcggacagaccatcggctatcagatccgcctggagagcaga
gtttcccctaaaaccctgctgacgttttgcacgagtggagttcttctgcggacgctgatg
tccggcgacgaagccctgtccaccgtcacgcatgtcattgtggacgaggtgcacgagcga
gacggcctgaccgacttcttactcactaagatgaaggagcttgtccagaagactccgtcg
ctgaagctaatcctgtccagcgctaccctggacgtcaatctgtttgtcagatacttcgga
gactgtcctgttattcacatcaaaggttgtccatatgaggtcaagcagctctttctggag
gacatcctgcggaccaccggctacaccaacaaagacatgaagaaatacaagaaggaggcg
cagaaagaggagagacagcagacgtctctgacagagtggtgtgacgcccgtctagacgtc
tcgcagccggacgctccgagggaaaagacgcatacttgtgtcctgcaggagaacgacctt
ctggatgacggcggcgacagcgtcttcagtcagatgagcgagaaggacgtggccacgcta
gagccctggctgctcagagaaatggacgcctgcatctccaacatcttcttgaaccaagac
gccgacgccttcgtgcagctcttcaatctgatcctgaacgagaacatcagcgtggattac
agacacagcgagaccagcgccacgccgctgatggtgtctgccggacggggttttctcagc
cagatggagcagctcctcagcatgggtgcaaacgtcaacatcaaagcctccaacggctgg
acggctctcgactgggccaaacacttcagtcaaactgaggctgtcgatctgctggagtct
cacatatggtgtgttgaatcaggtcagctggacgagtcgtctctggtccagacggccgcg
tcagagctgaatcccgaggaccaggagctgctcaaagcgtatcatcacagcttcgacgat
gagaaagtcgacctggatgtcatcctgcatctgctctccagcatctaccagagctctgac
gagggcgcagtgttgatattcctgcccggctacgatgagatcgtttctctgagagatcgc
atcctctttgatgataaaaggtttacagatcaccagcaaaggtttcaggtgttcatactg
cactctagtatgcagacgtcagaccagaagaaggttttgaggaacacgcctaaaggtgtt
cgcaaaataattctctcgaccaacatcgcagagaccagtatcacagtcaacgatgttgtt
tttgtcatcgactccggcaaagttaaagagaaagcctatgacgctctgaataacgtgacc
atgctgaagatggtgtggatatcgaaggccagcgctctgcagaggaagggcagagcgggc
cgctgcagaccaggcatctgtttccatctcttcagtcgtctgaggttcaacaacatgctg
gagcatcagattcctcagctgctgcgcatgccgctacaggagctgtgtctgcacactaaa
ctcctggcgcccgtcacctgtccgatcgcagagttcctgtctaaagcacctgagccgcca
cacctgcacaccatcaaacatgccgtacagatgctgaagaccatcgacgccatggacccc
tgggagaacctgacagagctgggctatcacctcgctgacctgcccgtggagccgcactta
gggaagatggttctgtgtgcggtggtgctgaagtgtttggaccccatcctcaccatcgcc
tgcacactcgcccacagagaccccttcgttcttcccgctcaagccgctcagaagcgcgcc
gccatgctgtgcagaaaacgcttcactgccaacaccttcagcgaccacatggctctgctc
cgcgcctttcaggcctggcagaaggctcgcagtgacggctgggaaagagcgttctgcgag
aagaacttcctctctcaggccaccatggagatcatcgtcgggatgcggacgcagcttctg
ggacagcttcgagctacagggttcgtgcgagcgcggggcggcggtgacatccgcgacgtc
aatcagaactcggagaactgggccgtagtgaaagccgctctggtcactggcatgtatccc
aacctgatccatgtggatcgggacagtctgagcctcatgggctccaaagagaagaaggtt
cgcttccacccgacctctgtcctcagccagccgcagtacaagaagatccctccagccaat
ggtcaggcagcagcagtggagtccctgcccactgattggctgatttatgacgagatgacc
cgcgctcacaggatcgccagtgtcaggtgctgctctgtggtcacgcccctcagcgtcgcc
atcttcgcaggaagtgccaaactccccagctccgccctccaggagcccgccgtccacaga
ggagctgatgctgtgaatgacagcagtgacagtgaggtggaggatcgctccagcgctcgt
ctggctcacatcagcatcgacgactggctccacttcaaactccacggagagacggcggag
ctgctgttcggtctgaggcagcgctggcagagtctgttcctgcggcggatccgctctccg
tccaagtcctgctctcagctggacgaggccaccatccgcgcgctggtgtcggttctgtcg
gccgaggagcagagcgcaggcctccagcagcccaccggcatcggccagagacctcgaccc
atgaccgcagacgaccccctgcagacgccggccggccggagcgcagcggagcatcaggag
ctggaggagcgcagcagcccagacaggcctcggctggcgtctcagctgaagaatcacaga
gctcttcactccaaacatctgggagacgagaacggccccgtgaagagcgctgacggaccc
tcgtccccgtcctcgggagcacgctgctcgtctccgtcctcacgtctgctgcgatccagc
gtccgctacttcatcatgaagagcagtaacatgaggaacatcgatctgtcccagcagagg
ggaatctggtccacgacgcccaacaacgagcacaagctgacgcgagccttcgtcgagagc
agcgccgtcttcctcgtcttctccgtccagggatccggacacttccagggttacgcgcgc
atggcgtcggcggtcagcggcgagcgctgtctggactggggctcggccggcctgggcggt
gtgttcggggtggagtggatccgtaaagacagtctgccgttccagctcacgcagcagctg
ctgaacccctggaacgacaacaagagagtacagatcagccgagacgcacaggaagtggag
ccgcagacaggaagtcagttactgcagctctgggagcgaatctga
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integrated database retrieval system
