Onychostoma macrolepis: 131542015
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Entry
131542015 CDS
T09350
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
omc
Onychostoma macrolepis
Pathway
omc04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131542015 (ddx3xb)
03041 Spliceosome [BR:
omc03041
]
131542015 (ddx3xb)
03036 Chromosome and associated proteins [BR:
omc03036
]
131542015 (ddx3xb)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131542015 (ddx3xb)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131542015 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
131542015 (ddx3xb)
Spliceosome [BR:
omc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
131542015 (ddx3xb)
Chromosome and associated proteins [BR:
omc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
131542015 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
131542015
NCBI-ProteinID:
XP_058634217
LinkDB
All DBs
Position
06:33744957..33757438
Genome browser
AA seq
723 aa
AA seq
DB search
MSHVAVENVHGLDQQLAALDLNSADVQGVTGRRYIPPHLRNKEASKNDSPGGWDNGRSNG
FVNGYHDGRDNRVNGGNSFGARGSMRNDRGGRGGFRGKTSGSYNPIQPMQSAGFGYENKE
AGGWNAPKDTAYNSFGGRSDRGKSSFFNDRGSSSRGRYERGGFGGGGNSRWVEDSRDDED
WSKPLPPNERVEHELFSGSNTGINFEKYDDIPVEATGQNCPQHIESFHDIDMGEIIMGNI
NLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTEGPGEALQAVK
NSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSHVRPCVVYGGADIGQQIR
ELERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMP
PKGLRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFL
LDLLNATVIPSEVQDSTGENVEKPGKESLTLVFVETKKGADALEDFLYREGYACTSIHGD
RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR
VGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSTRGRSKRFSGG
FGARDYRQTSGGTSSGGFGSRGGRNPGGHSGNRGFGGGKGGFGNFYSSDGYGGNYSQVDW
WGN
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgagaatgtgcacggtctagaccagcagctcgctgccctagac
ttgaactctgctgatgttcaaggagtcactggaaggcgttacattccacctcatctaagg
aacaaagaagcttccaaaaatgattctcccggaggatgggataacggacgcagcaatggc
ttcgtgaacggctaccatgatggccgtgacaaccgcgtgaacggaggcaacagtttcgga
gcccgcggctccatgcgcaacgaccgcggaggaagaggtggcttcagaggtaaaaccagc
ggttcctacaaccccatccagccaatgcagagcgcaggatttggatatgaaaacaaagaa
gccggtggctggaatgccccaaaagacactgcctacaacagctttggcggccgctctgac
cggggcaaatcctctttcttcaatgaccgcgggtcttcatccagggggaggtacgagcgt
ggcggttttggcggcggtgggaacagccgatgggtggaggactcgagagacgatgaagac
tggtccaagccgttacctcccaacgagcgtgtggaacacgagctcttctctggaagcaac
acagggattaactttgagaaatatgatgacattcctgttgaagccacaggccagaactgt
ccacaacacattgagagtttccatgatatagatatgggagagatcattatgggtaatata
aacctgagccgctacacacgacccactccggtccagaagcacgccattcccatcatcaag
tctaagagagacctgatggcgtgtgcacagacaggttctggaaagactgcagccttcctg
ttgccagtcctgagccagatatacactgaaggaccaggagaggcgctgcaggctgtgaag
aacagtgcacaggaaaacgggaaatatggccgacgtaagcagtatcccatttcactggtt
ttagccccaacaagggagctggctctccagatctatgatgaggccaggaagtttgcgtac
cgctctcacgtgcggccctgtgtggtgtatggaggcgctgatatcggtcagcagattcgt
gaactggagagaggctgccatctgctggtggccacacctgggcgtctggtggacatgatg
gagcggggcaagatcggtctggactactgcaattatctggtgctggatgaagcagacagg
atgttggacatgggcttcgagccacagattcgccggatcgtcgagcaggacaccatgccg
cccaaagggcttcgtcagaccatgatgttcagtgccaccttccccaaagagatccagatc
ttggctcgtgacttcctggaggaatatatcttcttggctgtgggcagggttggttctacc
tcagagaacatcacccagaaggtggtgtgggttgaagaaaatgacaagaggtccttcctg
ctggacttgctcaatgccacagtcattccgagtgaggttcaggacagtacgggggagaac
gtagaaaaacctggtaaagagtctttgactttggtgtttgttgagaccaagaagggagcg
gacgctctcgaggacttcctctaccgtgaaggctacgcctgcaccagtattcatggcgac
cgatcccagagagaccgcgaggaagcgctccaccagttccgctcagggagatgccccatc
ttagtggccacggctgtggctgctcgtggtctggacatctccaacgtgaaacacgtcatt
aactttgacctgcctagtgacatcgaggagtacgtccaccgcatcgggcgcactgggcgc
gtgggcaaccttggtcttgccacatcattcttcaatgataagaatggcaacatcaccaag
gacctgctggacatcttggtcgaggccaaacaggaagtcccgtcctggctggagagcctg
gcctatgagcaccagcacaagagtagcacccgtgggcgctccaagaggttttctggaggt
tttggtgccagagactaccgtcagaccagtggcggcaccagcagcggaggcttcgggagc
cgcggcggccgtaaccccggaggtcacagtggaaaccgcggatttggtggtggtaagggt
ggctttggtaacttctacagcagtgatggctatggaggaaactattcccaggtggactgg
tggggaaactaa
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