Onychostoma macrolepis: 131545957
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Entry
131545957 CDS
T09350
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
omc
Onychostoma macrolepis
Pathway
omc04510
Focal adhesion
omc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131545957 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131545957 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omc00536
]
131545957 (col2a1a)
Glycosaminoglycan binding proteins [BR:
omc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131545957 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
SNARE
Motif
Other DBs
NCBI-GeneID:
131545957
NCBI-ProteinID:
XP_058641198
LinkDB
All DBs
Position
08:complement(17768983..17792806)
Genome browser
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDYGGCIQDGQQYADRAVWKPEACRVCV
CDAGAVLCDEVICEDLRDCANPIIPPGECCPICPADTDEPIVSLGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGERGLKGEKGNTGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPSGPPGKPGSDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGVKGESGANGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVA
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GVTGPKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPTGSPGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLLGRTGLRGLPGKDGETGSAGSPGPAGPAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVAGEGGAAGPTGPRGERGFPGERGSSGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGSQGPPGLQGMPGERGTVGIPGAKGDRGDSGEKGPE
GASGKDGARGLTGPIGPPGPSGPNGAKGETGPIGSIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGEAGSLGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPPGPAGAAGKDGPKGVRGDAGLPGRAGDAGLRGAPGAPGEK
GEPGEDGPAGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGDR
GPPGPVGPPGLTGPSGETGREGNPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGAPGAP
GSVGPVGKQGDRGENGPQGPGGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGAPGDQGAAGPGGPSGAKGPAGPVGPAGKDGSNGQPGPIGPPGPRGRSGES
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSMADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKSKMQKHVWFGESMNGGFHFSYADSSQTPSTTSIQLN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcattgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagactatggcggctgcatccaa
gatggccagcagtatgcagaccgtgcagtatggaagccagaagcgtgccgtgtctgtgtg
tgcgatgcaggggcagtgctatgtgacgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgacaccgacgaacct
atcgtgtcacttggtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccgagaggacctgctggcccaatgggacccccaggagagcagggaccacgtggtgag
agaggacttaagggtgaaaagggaaataccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctaatggtccccctggactcgga
ggaaactttgctgctcagatggctggtggttttgacgagaaggcaggaggtgctcagatg
ggtgtgatgcagggtccaatgggtccaatgggtccccgtggtcctcctggccccactgga
gcacctggcccacaaggtttccaaggcaaccctggagaggctggtgaacctggccctgct
ggtcctcttggaccccgtggcccatctggaccccctggaaaacccggaagtgatggtgag
gctggcaaacctggaaagtctggtgagcgtggacccacagggcctcagggagcccgtgga
ttccccggaacccctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagaggccggtgctgcaggtgttaagggtgaatctggtgctaatggtgag
aacggtgctcctggaccaatgggtccacgtggccttcccggtgagagaggtcgtcctgga
ccttctggttctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcctactggagctcgtggacctgagggcgcacaaggaccccgtggagaggccggt
acacctggatcacctggacccgccggtgcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtggtcctggtattgctggtgcccctggtttcccaggaccc
cgtggcccgccaggacctcagggagctactggacctcttgggcctaaaggacaatctgga
gaccctggtatcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgca
ggacctcagggtgcccctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccggacctctcggacctcctggagaaagaggagctccaggtaaccgtgga
ttccctggtcaggatggtctagcaggagcaaagggcgcacccggtgatcgtggtgttcct
ggtgtgactggcccaaaaggagcaactggagatcctggtcgcacaggcgagtctggtctt
cctggagccagaggtctcactgggcgccctggtgatgctggaccgcaaggaaaagttgga
ccaactggttcccctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggtgccaatggtgaacctggaaaa
cctggagagaaaggacttcttggacgcactggtcttagaggtttgcctggtaaagatgga
gagactggatctgctggttcacctggtcctgctggtccagctggtgagagaggagagcag
ggtcaacctggtccatctggcttccagggtcttccaggacctactggagcccctggagag
cctggtaaacctggtgaccagggtgttgctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaagctctggccctcagggtctccag
ggaccaagaggacttccaggaactcccggtactgatggacctaagggtgcaattggacca
gctggtgctgctggatctcagggccctcctggtctgcagggcatgcctggtgagagagga
actgttggaatccctggagctaaaggtgacagaggagacagcggagagaaaggacctgaa
ggtgcttctggcaaagatggtgcaagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaactggtcccattggctcaattggtgctcctggt
gctcgtggtgcccctggcgatcgtggtgagattggtgcacccggacctgctggctttgct
ggacctcctggtgctgatggtcagcctggaattaagggagagcagggtgagtcaggacag
aaaggtgaggctggatcccttggaccccaaggaccatcaggagcacccggcccagtgggc
ccaactggtgttacaggacctaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggtgctgcaggaagagttggatcacctggccccaatggtaaccctggtcct
cctggccctgcaggggctgctggtaaagatggtcctaagggagttcgtggtgatgccggt
ctcccaggcagagcaggagatgctggactgcgtggagctcctggtgctcctggagagaag
ggagagcctggagaggatggtcctgctggtcctgatggtccttctggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccagga
cttccaggaccctctggtgagcctggcaaacagggaggtcctggctcttctggtgaccgt
ggaccccctggccctgttggacctcctggattgactggaccttctggagagactggacgt
gagggtaatcctggatctgatggtccacctggtagagatggtgctcctggtgtgaagggt
gagcgtggtaacactggcccaattggtgctcctggagctcctggtgcacctggtgctcct
ggttctgttggtccagttggcaaacagggagacagaggagagaatggcccacaaggacct
ggtggaccccctggacccgctggagctagaggcatggttggaccccaagggcctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacacagaggattcacc
ggtctgcagggtctgcctggacctcctggtgctcctggagaccagggtgctgctggacct
ggtggaccgagtggcgctaaaggacctgcaggacctgttggaccagctggtaaggatggt
tctaatggtcagcctggacctattggaccacctggacctcgtggacgctctggagagtct
ggcccaagtggtccacctggtaaccctggaccccctggtcctcctggtccccctggccct
ggcattgacatgtctgccttcgctgggttgtctcagcccgagaagggacccgatcctctg
cgttacatgcgtgccgacgaggcctccagctctcttagacaacatgatgtggaggtggat
gccacactgaagtcaatcaacagccagattgaggacatccgcagtccagatggctcccgc
aagaaccctgcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactactgggtggatcctaaccttggtagcatggctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccagcactcctaaaatcccacgcaagaactgg
tggagcagcaagagcaagatgcagaagcacgtgtggtttggagagagcatgaatggtgga
ttccacttcagctatgctgatagcagccagactcctagtactaccagcatccagctgaac
ttcctgagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gttgcttacatggaccaagccacaggaaatctgaagaaggccgttctgctgcagggttcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccattgtggacattgctcccatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
