Onychostoma macrolepis: 131547864
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Entry
131547864 CDS
T09350
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
omc
Onychostoma macrolepis
Pathway
omc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131547864 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131547864 (mtrex)
03041 Spliceosome [BR:
omc03041
]
131547864 (mtrex)
03009 Ribosome biogenesis [BR:
omc03009
]
131547864 (mtrex)
03016 Transfer RNA biogenesis [BR:
omc03016
]
131547864 (mtrex)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131547864 (mtrex)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131547864 (mtrex)
Spliceosome [BR:
omc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131547864 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
131547864 (mtrex)
Ribosome biogenesis [BR:
omc03009
]
Eukaryotic type
Pre-60S particles
Helicases
131547864 (mtrex)
Transfer RNA biogenesis [BR:
omc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131547864 (mtrex)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Stealth_CR1
Motif
Other DBs
NCBI-GeneID:
131547864
NCBI-ProteinID:
XP_058644587
LinkDB
All DBs
Position
10:complement(7088226..7130730)
Genome browser
AA seq
1055 aa
AA seq
DB search
MSLPARGLRIALWDLCLFEVMADAFGDDLFSVFDEEQAGSSKKATPKSAAQAGKTPDKGG
KQQSDSAAALKRDADNDGSDEVVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTH
EVVLPADEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAE
YAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEIL
RSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQF
AEWICHLHKQPCHVVYTDYRPTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRD
AGDTGGNAGGKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVA
KLDFNTDDEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETI
EILFSEGLIKALFATETFAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRR
GMDERGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEK
SFYQFQHYRAVPGVVEKMKKLEEEYNAIRIPNEESVVTYYKIRQQLSKLGKEIEEFIHKP
RYCLPFLQPGRLVRVKKEDLDFGWGLVVNFHKKTNVKVGIGDADPLFVVEVLLHCSKDSV
KNAATEVAKPAGPGEKGEMQVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQ
KRFPDGIPLLDPIDDMGIKDPALKKVIQKVEAFEHRMYTHPLHSDPKLEAVYTLCEKKAL
IAGEIKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELL
LTEMVFNGLFNDLTAEQATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSA
EAKLDVDEDTYLNQFRPHLMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQM
CQAAKAIGNTELENKFATGITKIKRDIVFAASLYL
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttccggcacgcggcctgcgcatcgcactgtgggatttgtgtctgtttgaagtc
atggcggacgcctttggagacgatttgttcagcgtgtttgacgaagaacaggccggttct
agcaaaaaagccactccaaagtccgcagctcaggcaggaaagactcctgataaaggcggt
aaacagcagagcgattcagcagctgcgctcaaaagagatgctgacaatgacgggtcagat
gaggtggtgcttgggaaaagacagaagctggaaaccgtgtcagctgaggagatcaatctg
tcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggctgcactcat
gaggtggttcttccggcagacgaggaatacactccactgaaaccacgcgttggaaaagca
gctaaggagtaccccttcatactcgaccctttccagcgtgaggccatcctgtgcattgat
aacaaccagtctgtgctagtgtcggcccacacatcggcaggaaagaccgtgtgtgcggag
tatgccattgctctggctctccgagaaaagcagcgagtgatcttcaccagccccatcaaa
gctctgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtttgatg
accggtgatgttaccattaaccccacggcttcctgcctggttatgaccaccgagattttg
aggagcatgctgtacagagggtcagaggttatgagggaggtggcgtgggtcatctttgat
gagatccattacatgagagactcagagcgtggagtggtctgggaggaaaccatcatccta
ctgccagacaacgtgcatcatgtcttcctgtcagccaccattcccaacgctcgacagttt
gccgagtggatttgtcaccttcacaaacagccctgccacgtggtgtacacggactaccgc
cccactccactgcagcactatgtctttccagcaggaggcgatggactccaccttgttgtg
gatgagaacggagagttcagagaagacaattttaacacggcaatgcaggtcctgagggat
gcaggggacacaggaggcaatgctgggggcaaatgggaccccaaaggcagaaagggtgga
accaaaggtccatctaatgtctttaagattgtgaagatgatcatggaaaggaacttccag
ccagtgattatctttagcttcagtaagaaagaatgtgaggcctacgcactacaggtggct
aaactggatttcaacacagacgatgagaagaaactggtggaagaagtgttcaacaatgcc
acagactgcctgtctgatgaagacaaaaagctgccgcaggtggagcatgttctgccgttg
ctgaagagagggattggaattcatcatggcggcctcctcccgatcctaaaagagaccatt
gagatcctgttctctgaggggctgataaaggccttgtttgctacagaaacatttgccatg
ggaatcaacatgcctgcaagaaccgtgctcttcaccagtgcgcgcaaatttgacggcaaa
gacttccgctggatcacctcaggagagtatatccagatgtcaggacgtgctggcagaaga
ggaatggacgagaggggaatagtcattttcatggtggatgagaagatgagccctgcggtg
ggcaaacagttactgaagggttcggcagatcctctgaacagtgcgttccacctgacctac
aacatggtgctcaatctactgcgtgtggaggagatcaacccagagtacatgctggagaaa
tccttctaccagttccagcactatagagccgtgcctggtgttgtggagaagatgaaaaag
ctggaggaggagtataatgcaattcgaatccctaatgaagagagcgtggtgacctactac
aagatccgtcagcagctgtccaaactgggcaaagaaattgaggaatttattcacaaacct
agatactgcctgcccttcctgcagccgggcagactggtcagggtgaaaaaagaagatctg
gatttcggttggggcttagtcgtcaattttcacaagaagacaaatgtcaaggttggaatt
ggggatgctgacccgttatttgtggtggaggttctgctccactgcagcaaagacagcgtg
aagaacgcagccacggaggtagccaaaccagcaggcccaggagaaaagggcgagatgcag
gttgttcctgtgattcttcatctcatcacctccatcagctctgtgcgcctctacatcccc
aaagatctgcggccgtacgacaaccgacagagcatgctcaaatccatacaggaggtgcag
aaacgtttcccagatggcattcctctgctagatcccatagacgacatgggcatcaaggat
ccagcgctgaaaaaggtcattcagaaggtggaggcgttcgagcacaggatgtacacgcac
cccctgcacagcgaccccaaactggaggccgtttacactctgtgtgagaagaaagcgctg
attgcaggtgaaattaaagcggcgaagcgcgagctaaagaaagcacgtaccgtgctgcag
atggatgagctgaagtgcaggaagcgtgtgttgcggcgcctgggattcgccacttcctct
gatgtcatcgaaatgaaaggccgtgtggcctgtgagatcagcagtgcagatgagctgttg
ctgacagagatggtgtttaacgggctgttcaatgacctgacggcagagcaggccactgcg
cttctcagctgctttgtcttccaggaaaatgctaacgagatgcccaaactgacagaacag
ctggctggaccacttcgacagatgcaggaatgtgccaagcgtattgctaaggtgtccgca
gaggccaagctggacgtagatgaggacacttacctgaaccagttccgcccgcacctgatg
gatgtggtctacacctgggccaacggctcctcgttctctcagatatgcaaaatgacagac
gtgtttgaaggcagtattatccgctgtatgcgcagattggaggagctcttgaggcagatg
tgccaggcagccaaggccattggaaacacggagctggagaataagtttgccacgggtata
acgaagattaagagggatatcgtgtttgctgccagtctttacctgtga
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