Onychostoma macrolepis: 131547907
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Entry
131547907 CDS
T09350
Symbol
patl1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
omc
Onychostoma macrolepis
Pathway
omc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131547907 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131547907 (patl1)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131547907 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
131547907 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
131547907
NCBI-ProteinID:
XP_058644702
LinkDB
All DBs
Position
01:12477230..12492074
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AA seq
761 aa
AA seq
DB search
MFHFQSFDDDCTLEEEGLVQEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDERVRDGV
HGAGDASSVDLPLAGSNAHSSALPQPSSSSRLYPDIDERGGGDLAESLTRLILGSDPAIA
GVGTARSDRSHLPPMLSGQAPQPXALAEQSHLLLSYQQQQQRMHRGPAPLPQINSHSIWE
NSMGFSPGLITQKEDKTLMSIIKEVGLPNRPPALSREEGRDLSERVPPPRSCSPVIGSPP
VRAIPIGTPPKQPMSQVHNQQNNHPSAIHVRASVPLRYPPPFPERLSPNHILSIANSPLS
HPPFPAGVGPVLSQLQRAQLLNSQFPRGPAPPLLQGGVGGFRPFFGQSGPRMGPHGPPLG
HVPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRKNRDPYGNLMTQREKEWVAR
IQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHTYRPVQF
AGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQD
FEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMSVRKGKRLISR
LLPFLPQPQAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVTAVIQSMSSTSLTDLLQEL
QGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLKVP
SSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgttccattttcagtcttttgacgatgactgcaccctggaggaggaagggttggtacag
gaagaagatgaaattgatcagttcaatgatgacactttcggtgcaggggcaatagatgat
gattggcaggaggagcacgcccgcctcgcagagcttgatgagcgggtacgagacggagtg
catggagcgggcgacgcctcctccgttgacctccctctcgctggcagcaatgcccactct
tcggccctccctcaaccctcctcttcctcccggctttaccctgacatagatgaacggggt
ggcggtgacctggcggagtcgctgactcggctcatcttgggctcggatcctgctattgct
ggagtgggcaccgccaggtcggacagatctcaccttcctccgatgctgtccggtcaggct
cctcagcctncggcattagctgaacagtctcatctgctgctgagctaccaacaacagcag
cagcgcatgcacagagggccggctcctcttccacagataaactctcacagtatttgggag
aacagtatgggcttcagtcctggactaatcactcaaaaagaggacaaaacgcttatgtcc
attatcaaagaggtggggcttccaaatcggcctcctgcactcagcagagaagaagggcgg
gatttgtccgaaagggttccgcctcctcgctcctgctcacctgtgattggaagtccgcct
gtaagggctatacctattggaacacctccaaaacagcccatgagtcaagtccacaatcag
cagaataatcacccttcagccattcacgtgagagcctctgtgccactgcgctacccacca
cccttccctgagcgtctgtcccccaaccacatcctcagcatagctaactcaccgttgtct
catcctccattccctgctggtgttggccctgttctgtctcagttacagagagcccaactg
ctcaactctcagttcccacgtggtccagctcccccattattacagggaggtgtcggggga
ttcaggccgttctttgggcagtctggtcctagaatgggtccccacgggccacctcttggc
cacgtgcccatccgacacaacaccacccacctccacccacagcaccgcaggatgctcaac
cagaggatgcagaacagaggcttgggtgatcatgtcggagggagaggtgttggagacagg
aaaaaccgagatccttacggcaatctgatgacacaaagagagaaggaatgggtagcaaga
atccaaatgatgcagcttcaaagcaccgatccgtatctggatgactactattaccagaat
tactatgaaaaaatggagaagcgtcaagagcgggacagagacaacaggaaggagcacacc
accaaactcatcactcctcaggtggctaaactggagcacacctatcggccagtgcagttt
gccggctcattaggaaaactcactgtctccagtgtgaacaatccaaggaaaatgattgat
gccgtggtgaccactcgcagtgatgacgaggaaaaaagagaaaagcaagtgtggaacaaa
agacggcaaatcctttacactgtggagaagatgtacagtcttctattagaagtgcaagac
tttgagaagaagttcttgcagacccctgagcaccaaagagatgccctgctagaacagcat
aaaacccacacgctgcagctctacaactccctccgagaaaaagagtgggacgaccgagtg
agcgatgagcagtgcttgatgatcatgtctgtgcgtaaggggaaacgcctcatctccaga
ctcctccccttcctgccacagccccaggctgctgctgttgtcatgggaatagccaggaac
cttccagctctggccaagaaagacaaacaagaccaggtactgtgttggttggtagagcca
gtgacagcagtaatccagtccatgtcgagtacctccctcactgatctccttcaggagctg
cagggcagtgaaggacagctgccccttgtgctgcaaaataagtttggcgtgacgttgctc
tatctgattctgagtgaaggagagaggatgcagagctccgatcccaactgtcagctcatg
gacgataaccgctggactgagttggtgttctctgtgacgcgggagcttttgaaggtcccg
tcctctgcgctttcatcgccgctgtttactcctccaaacctagtgtcactgttctctcga
tatgtggaccggcaaagactcgagctcttgcaggagaagctacagatcacagccctgtcc
aggtag
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