Onychostoma macrolepis: 131549239
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Entry
131549239 CDS
T09350
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
omc
Onychostoma macrolepis
Pathway
omc04510
Focal adhesion
omc04512
ECM-receptor interaction
omc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131549239 (col2a1b)
04518 Integrin signaling
131549239 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131549239 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omc00536
]
131549239 (col2a1b)
Glycosaminoglycan binding proteins [BR:
omc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131549239 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
131549239
NCBI-ProteinID:
XP_058647216
LinkDB
All DBs
Position
11:7429102..7474065
Genome browser
AA seq
1493 aa
AA seq
DB search
MTSRAFLKWIHSAWSECVYIEEKRLTNSTKQQSEEDPGSCTQDGLFYRDKDVWKPEPCRI
CVCDTGAVLCDEIVCEELKDCPKPEIPFGECCPVCAADQPSSPGLPGAKGQKGEPGDITD
VVGPRGPAGPMGPPGEQGLRGDRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPG
LGGNFAAQMAGGFDDKAGGAQMGVMQGPMGPMGPRGPPGPNGSPGPQGFQGNPGEAGESG
SAGPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPG
LDGAKGESGATGAKGEAGSSGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGSPGAAG
PPGPVGTAGSPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGVPGSSGPSGMSGNPGTDG
LPGAKGSVGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDSGLAGFKGEAGPKGEIG
NAGPQGTPGPAGEEGKRGPRGEPGALGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERG
AAGVSGPKGAGGDPGRPGEPGLPGARGLTGRAGDAGPQGKAGPSGAAGEDGRPGPPGPQG
ARGQPGVMGFPGPKGGNGEAGKPGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERG
EQGQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGVGPQG
LQGPRGLPGTPGTDGPKGGVGPAGAPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGEKG
PEGAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPPGSAG
FAGPPGADGQPGTKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPG
ATGFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRPGDAGLRGPAGTPG
EKGDPGEDGPHGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPG
DRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPTGAPGAPGGTG
APGPVGPTGKQGDRGEAGPQGPAGASGPAGARGMPGPQGPRGDKGESGDSGERGQKGHRG
FTGLQGLPGPPGQPGDQGASGPSGPGGARGPPGPVGPAGKDGANGLPGPIGPPGPRGRSG
ETGPSGPPGNPGPPGLPGPPGPGIDMSAFAGLSHPEKGPDPLRYMRADQAAEGDRQHDAE
VDATLKSLNNQMENIRSPDGTKKSPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAMKVF
CNMETGETCVYPKPANIPRKSWWTSKGAERKHVWFGEAMNGGFHFGYGDDNLAPNTASIQ
MTFLRLLSTEASQNLTYHCKNSIAYMDETTGNLKKALLLQGSNDVEIRAEGNSRFTYAVL
EDGCKKHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGAHQEFGVDVGAVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgacctctagggcatttctaaagtggattcatagcgcctggtcagaatgtgtttatatt
gaagagaaaagactaaccaacagcactaagcagcagtctgaagaagacccaggcagctgc
acgcaggacggcctgttctatagggacaaggacgtgtggaaaccagagccgtgtcgcatc
tgcgtttgcgacaccggtgcggtcctgtgcgatgaaatcgtctgcgaggagctgaaagac
tgtcccaaacccgagatcccgtttggggagtgctgtccagtctgtgccgctgaccagcct
tcctcccctggcttgccaggtgctaagggacaaaagggggaaccaggagacataacagat
gttgtgggaccgaggggaccggccggtcctatgggacccccaggagaacaagggctgcga
ggagacagaggagagaagggggagaagggaagtccagggccccgtggtagagatggtgag
ccggggacccctggaaaccccgggcctcctggaccgcctgggccaaatggacctccaggc
ctcggtggaaactttgctgctcagatggctggtggatttgatgacaaagctggaggagca
cagatgggagtgatgcaaggaccaatgggtccgatgggtcctcgaggaccgccaggcccc
aacggatctcctggcccacaaggatttcaaggcaaccctggagaagctggagagtccgga
tcagccggcccaatgggtcctcgtggccccccgggtccctcaggaaaaccaggagatgat
ggggaagcaggcaaacctgggaaatctggtgaacgtggaccttctgggcctcagggagct
cgtggattcccaggaacaccaggtctacctggaatcaagggacacagaggttatccaggt
cttgatggtgctaaaggagagtccggagccactggggctaaaggtgaggccgggtcttct
ggagaaagcggcgctcctggaccaatgggcccacgtggtttacctggtgaaagggggcgt
ccaggaccgtccggagctgctggtgctcgagggaatgatgggtcacccggcgctgctggt
cctcctggtccagttggtacggctggctctcccggtttcccaggatcccccggttctaag
ggtgaagcaggacctactggagccagaggacctgaaggagcacaaggaccccgaggagag
tctggcgtccccggatcttcaggaccttctggaatgtctggtaaccccgggactgatggc
ctccctggagccaaaggatcagtgggtgctcctggtatcgctggcgctcctggtttccca
ggccctcggggccctcctggaccccagggagcgactggacctctggggccgaagggacag
tctggtgattcgggtctcgcagggttcaagggtgaggctggtcctaaaggagaaattggc
aacgctgggcctcaaggtacccctggccctgccggagaggaaggtaagcgaggacccaga
ggagagcccggcgctcttggacccctcgggccgcctggagagagaggagctcctggtaat
cgaggttttcctggacaagatggtctggctggaccaaagggtgctccgggcgagcgggga
gctgcgggagtgtcgggacccaagggagccggcggagatccgggccggcctggagaaccg
ggtctgcctggtgcaaggggtctgacgggacgcgcgggcgatgctggtccacagggcaaa
gctggtccgtctggtgctgctggtgaagacggccggccggggcccccgggccctcagggt
gctcgcggtcagccgggagtcatgggattccctggacccaagggtggcaatggtgaggct
gggaagcccggagagaagggcctcgctggagctcctggtttgcgtggtcttccagggaaa
gatggtgagacgggcgctgccggaccccctggacctgctggtcctgcaggagaaagagga
gagcagggtcagcccggaccctccggattccagggtctccctggacccccgggcccccct
ggtgaaggtggtaaacctggcgatcagggtgttccaggagaggctggggccgcaggggcc
accggaccacgcggtgagcggggtttcccaggagagagaggaggagtggggccccagggc
ctccaggggcctcgaggtcttccaggaactccaggaactgatgggcccaagggtggcgtc
ggcccggcgggagctcctggtgctcaggggcctccgggactgcaggggatgcctggagag
agaggcacgtccggcattcctggaccaaagggggacagaggtgacaacggtgagaaagga
cctgaaggagctcctgggaaagacggcgcaagaggtttaacgggtccaatcggtcctcct
ggtcctggcggacccaacggtgaaaagggagaatctggacctgcaggaccatctggagct
gctggtactcgcggtgttcctggtgacagaggagagactggacctcctggttctgcaggt
tttgctggtcctcctggtgcagatggacagcctggcactaagggagaacagggtgaaggt
ggacagaagggtgatgctggtgcaccgggccctcaggggccttctggagctccaggtcct
cagggaccaactggtgtgtctggaccaaaaggggctcgcggtgctcaaggacctcctggt
gccacaggtttccctggagctgctggtagagtcggacctcctggtcccaatggtaacccg
ggtccggctggtcctgctggtcctcctggtaaagacggtcctaagggtgtgcgcggtgac
ggtggtcctcctggaagacccggggacgctggcttgcgtgggccggctgggactcctgga
gagaagggagatcctggagaagatgggcctcatggtccggatgggcctgcaggtcctcag
ggtctggctgggcagcgtggtattgttggtcttcctggacagcgtggtgaaagaggtttc
cccggcctgcctggaccctctggtgagcctggtaaacaaggagctcctggaggacctgga
gaccgtggaccccctggacctgttggaccgcccggtctgaccggacctgctggggaacct
gggagagagggcaatcccggatctgatggtcctcctggccgagacggttccgcaggaata
aagggtgaccgaggagacactggacccacgggtgctcctggtgctccgggtggcactggt
gctcccggtccggtcggacccaccggcaaacagggagaccgaggagaggccggaccccaa
ggacctgctggagcttcggggcctgctggagctcggggaatgcctggcccacaaggcccg
cgcggagataagggagagtctggcgattcaggtgagagaggacagaaaggacacagagga
ttcaccggtcttcagggtctgcctgggcctcctggccaacctggtgaccaaggagcttct
ggaccttctggacccggtggagcaagaggacccccaggccctgttggtccagctggaaaa
gatggtgcaaatggtttgcctggacccatcggaccccctggacctcgcggtcgctctgga
gagactgggccatccggccccccaggaaatcctggtccccccggtcttcctggccccccg
ggccccggcatcgacatgtctgcttttgctggtctgtcccatcctgagaagggtcctgac
cccttaaggtacatgagggcagaccaggccgccgaaggtgaccgccagcacgatgcagag
gtggatgccactctgaaatccctgaacaatcagatggagaacatccgcagtcctgacggc
actaagaagagcccggcccggacctgcagagacctgaagctctgccaccccgactggaag
agcggtgaatactggattgatcctaaccagggctgcacagttgatgctatgaaggtcttc
tgcaacatggagaccggcgagacctgcgtttatccaaagcctgccaatatcccacgcaag
agctggtggacttccaagggagctgaacgcaaacacgtttggtttggagaagccatgaat
ggtggattccattttggctatggagacgacaatctggcacctaatacagcaagcattcag
atgactttcctgagactgctgtccacagaggcctcgcagaacctcacctaccactgcaag
aacagcattgcttacatggatgagaccactggaaacctgaagaaagctctgctgctgcag
gggtccaatgatgtggagatccgcgcggagggcaacagccgcttcacatatgctgttctt
gaggacggctgcaagaaacacacaggacaatggagcaagacggtcatcgagtacaaatca
cagaagacttcacgcctgcccattgtggacattgcacctatggatattggaggagctcat
caggagtttggagtggacgtgggtgccgtctgtttcttgtaa
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integrated database retrieval system
