Onychostoma macrolepis: 131549747
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Entry
131549747 CDS
T09350
Symbol
col5a3b
Name
(RefSeq) collagen, type V, alpha 3b isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
omc
Onychostoma macrolepis
Pathway
omc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
131549747 (col5a3b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omc00536
]
131549747 (col5a3b)
Glycosaminoglycan binding proteins [BR:
omc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131549747 (col5a3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
131549747
NCBI-ProteinID:
XP_058648165
LinkDB
All DBs
Position
01:2230670..2260464
Genome browser
AA seq
1727 aa
AA seq
DB search
MMKMKMMMKTHRITGVAPLIVLLLLHATRAAANHIDVLKILDLSDSMEGVSLEAGLCTSR
RGSEEADLAYKIEKKIQVSVPTNQLFPDAAFPEDFSVLVTVRARRGAQCFLLSVYDSEGV
QQLGLELGRSPVFLYEDHNGQPTPDLYPIFKKINLADGKWHRVAYSVEGQKVTLYLDCQK
VATLDLPRGPEPKVSTDGVTVFGTRLLDEEVFEGEIQQLLIAPDPRAAADYCHTHIPDCD
SALTYNSLSLDPVEVKKPPRKPIEEEFDDDLYNDLYSDLSVSTAGDNVTEYEMVEYEDTE
NETEYFKEYTEYQEYEDYEYRPAERQEQFFSGQALGPEKGQKGEPALLGEGTLIVGPTGL
PGAEGPPGEPGPMGPPGPIGDPGDPGPEGRQGLAGANGIPGPPGNLLMLPFQSGGDARHG
PVISAQEAQAQAILQHTKLSLKGPPGPLGLTGRPGPLGSPGPRGLKGDHGFTGPPGPRGS
LGAPGFNGKPGKRGRGGIDGARGEPGETGTKGDRGFDGLPGLPGNKGHRGDQGKKGPVGP
PGGPGEKGSDGQPGPRGQPGEPGLAGLTGQRGLPGPPGQQGIRGVDGVQGSKGNMGPPGE
PGAPGQQGNPGFQGFPGPQGLVGLPGEKGPQGKKGMKGLPGVDGPPGHPGREGSPGEKGL
PGAAGVQGPVGYPGPRGVKGADGLRGLKGSKGEKGEDGFPGAKGEMGAKGDTGDSGALGM
RGEDGPEGPKGQSGPLGEHGPAGIAGEKGKLGVPGLPGYPGRQGLKGGDGFPGPVGVPGE
KGKKGPPGPAGAAGQRGPNGARGGRGARGPTGKSGDKGSSGHDGPPGPTGERGPQGHQGR
VGEVGPKGPNGPAGKDGLPGHPGQRGEPGFQGKTGPPGPAGVVGPQGNSGETGPMGERGH
PGTAGPAGEQGLPGAAGKEGAKGDPGGPGTSGKSGPAGLKGFRGSRGAPGAMGPVGLKGG
AGPIGPPGPSGPTGERGPPGLAGAIGQPGRTGTIGGPGPMGEKGEPGDKGLIGPAGQDGD
QGPVGLPGAAGPPGPPGEDGDKGETGAPGQKGSKGDKGESGPPGPAGTQGPEGQPGAPGV
DGEPGPPGQQGMYGQKGDEGLRGFKGSRGPGGLQGMPGTPGEKGESGNSGLLGPPGQFGP
RGAQGPSGGQGPPGRPGVRGQPGGVGEKGEDGESGDPGPVGVPGSAGEKGEQGEKGDTGP
PGAAGSPGARGASGEDGSKGNAGPIGFPGDMGAPGEAGVNGIDGTPGSKGDNGDPGKSGP
PGPSGEPGPPGRPGRRGHLGPPGKEGRPGLKGNKGAPGYEGIMGKTGPVGGQGNPGKAGL
QGLPGIPGPAGEQGLNGPPGQTGPPGPMGPAGLAGLKGDSGKKGEKGHGGLIGLIGPPGE
FGEKGDRGLPGNQGPQGAKGDEGPVGPPGLSGPPGLPGLSGSMGQKGSKGNQGPIGPRGD
PGPAGHPGPPGLPAVGMVAPPALDGRGKRRRHSDVDGAAMEDGQMQDEEAPGEEKDMEEV
FASLVSMRTDVEGLRTPLGTYHSPARTCKELWMCHPEYPDGVYWIDPNQGCHRDAFKVFC
NFTAEGETCLQPHSSVQTVKMASWSREKPGTWFSQFKKGSQFSYVDVDGNPVHIVQLGFL
KLLSATAHQSFTYVCQNSAGWFDSTSFSYRHALRFRGSNGEELTQQNAHYIQPTIDGCQS
RSGQDRTVLEVDSAQSDALPLVDVAVTDFGSAKQKFGFSVGKVCFNG
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagatgaagatgatgatgaagactcaccggatcaccggagtcgcgccgctgatc
gttttattgctgctgcacgcgacacgagcagcagccaatcacatcgatgtgctgaagatt
ctggacctatcagattccatggagggcgtgtccttggaggcggggctgtgcacaagtagg
cggggctcagaggaggcggatctcgcttataagattgagaagaaaattcaagttagtgtt
ccgaccaatcagctcttcccagacgctgcgttcccggaggatttctcggtgctggtgacg
gtccgagcgcggcgcggcgctcagtgttttctgctgtcggtgtatgacagcgagggagtg
cagcagctgggcctggagctcggacgctcgcccgtcttcctctatgaggaccacaacggc
cagccgacccctgacctctaccccatcttcaagaagatcaacctcgccgacggcaagtgg
cacagagtggcctacagcgtggaaggtcagaaggtcacgctgtacctggactgtcagaaa
gtggcgacccttgacctccccagaggccccgagcctaaggtcagcacagacggagtgacg
gtgttcgggacgagactcctggatgaagaagtgtttgagggtgagatccagcagctgtta
atcgctccagaccccagagctgctgccgattactgccacacccacattcctgactgtgac
tccgccctcacctacaacagcctatcactggaccccgtggaggtcaagaagccgccgagg
aagccaatcgaagaggagttcgacgatgacctttacaatgacctttacagtgacctgtcg
gtgtcgactgcgggagacaacgtcaccgagtacgagatggtggagtacgaggacactgag
aacgagacggagtattttaaggagtacacagagtatcaggagtatgaggattacgagtac
cgtccggcggagagacaggagcagttcttcagcggtcaggctctcggtccagagaagggt
cagaagggcgagccggcgctgctgggggaggggacgctgatcgtgggacccacaggcctg
cctggtgctgaggggccgccgggtgagcccggccctatgggacccccggggccgatcgga
gatccaggagacccgggtcccgagggccgacaaggacttgcaggggccaatgggatacct
ggacctccagggaacctgctgatgctgccgtttcagtctggcggtgatgctcgtcacggt
cctgtcatatccgctcaagaagctcaagctcaagccatcctgcagcacactaagctctct
ctgaaaggcccgccgggaccgttaggactgaccggacgccccggacctctggggtctccg
ggcccgcggggtctgaagggcgatcatgggttcacaggacctccgggtcctcgtgggtcg
ctgggggctccaggattcaatggtaaaccaggcaagaggggccgtggtgggatcgacgga
gccagaggtgaaccaggagagactggaactaaaggtgacagagggtttgacgggttaccg
ggtctgcctggaaacaagggtcaccggggagatcaagggaagaaggggccagtcggtcct
ccaggaggccctggagagaaaggttcagatggtcagccggggcccagaggtcagccagga
gagcctggtctagcagggttgacgggtcagagaggtcttcctggtcctccaggacagcag
ggtattcgtggggttgatggagttcagggttcaaagggaaacatggggccgcctggagaa
cctggagctccaggacagcaggggaacccgggtttccagggttttcctggacctcaggga
ctagtcggattaccaggagaaaagggtcctcaggggaagaagggaatgaagggcttacct
ggtgtcgacggcccaccgggtcatccaggacgagaggggtcgcctggagagaaaggcctg
ccgggtgcagcaggtgttcaggggcctgtgggatatcctggacccagaggagtcaaaggt
gctgatgggctcagaggactgaagggcagtaaaggagagaagggtgaagatggtttccca
ggagccaaaggagaaatgggagctaaaggagacactggagactcgggtgctctagggatg
cgcggtgaggacggtcccgagggccccaaagggcagagtggtcccttgggtgaacatgga
cccgcaggcatcgctggagaaaagggaaagctgggtgttccaggtttgccaggttaccca
ggccgtcagggcctgaagggtggtgatggttttccaggtcctgtcggcgttccaggagaa
aaggggaagaagggtccaccgggtcctgcaggggccgccggtcagaggggacccaatggt
gctcgtggaggcaggggtgcaagaggacccactgggaaatcaggagacaaggggtcttca
ggacatgatggccctccagggcccacaggagagagaggaccacaagggcatcagggacgt
gtaggtgaggtgggacccaagggacccaacgggcctgctgggaaggacggcctgccgggt
catccaggccagcggggggagccgggtttccaaggcaagacgggtcctccaggaccagct
ggtgtcgtcgggccgcagggtaattcaggagaaactggaccgatgggggagagaggacac
ccgggaaccgcaggacctgctggagagcaaggtttacctggagccgctgggaaggagggt
gcaaagggcgaccctggaggtccaggtacttcaggaaagagcggcccagcaggtctgaaa
gggttccgtggaagtcgtggagcgccgggtgccatggggccagttggattaaagggaggg
gcggggccaatcgggccccctggaccttctgggcccacaggtgaacggggcccccctgga
ctggctggtgccattggtcagcctggtcgaactggaaccatcggtgggcctggaccaatg
ggagagaagggagagccaggagataaaggtctgatcggacccgcaggacaggatggtgac
caggggcccgttggattaccaggagctgctggccctccaggacccccaggagaggatgga
gacaagggagaaacaggggctccagggcagaaaggcagcaaaggagacaaaggagaatca
gggcctccaggaccagccggcactcaggggccagaggggcagccgggagcaccgggtgtg
gacggtgagcccggtcctccaggacagcagggcatgtatggacagaagggagatgagggc
ctcagaggattcaagggctccaggggcccgggggggctacaggggatgcccggtactcca
ggagaaaaaggagagagcgggaactctggtctactgggtcctcctggtcagtttgggccc
agaggagctcagggaccctctggtggacagggtcctcctggccgtcctggagtacgtggt
cagcctggtggagtcggtgagaagggtgaagatggagagtctggtgatcctggacctgtt
ggtgttcctggcagtgcgggcgagaaaggtgagcagggtgagaaaggagacacaggacca
cccggagctgcaggttccccgggagccagaggagcatctggggaagacggatcaaagggg
aacgcgggtcctattggttttcctggagatatgggtgctcctggagaggcaggtgttaac
ggtatcgatgggactcctggatctaaaggagacaatggcgatccaggcaaatcgggccct
ccaggaccctctggagaaccaggaccaccaggaagaccaggacgcaggggtcacttgggt
cctcctggaaaagaggggcggccggggctgaagggcaacaagggagctccaggatacgaa
ggcatcatgggaaagacagggccggtgggcggtcaggggaacccagggaaagcaggactt
caggggcttccaggaatccctggaccagcgggagaacaagggctgaatggacccccaggt
caaacgggacccccggggccgatgggtcccgctggactggcaggactgaagggagattcg
ggcaagaaaggagagaagggtcatggcggtctgatcggtttgattgggccgccaggtgag
ttcggagagaaaggtgatcgaggactgccgggaaaccaggggccgcagggagccaaagga
gacgagggaccagtcggacctccaggactcagtggaccaccgggattaccaggactgtct
ggatccatgggacagaaagggtctaaaggaaaccagggccccattggacccagaggagat
cctggtcctgctggacaccctggtcccccgggtcttcctgcggtgggaatggtggctcct
ccggcgctggatggccgagggaagcggaggagacattcagatgtggatggagcggcgatg
gaggacggacagatgcaggacgaggaggctccgggggaggagaaggacatggaggaggtg
tttgcgtctctggtctccatgaggacggatgtggagggactccgaacaccactgggcacc
taccacagtcctgcccgcacctgcaaagagctgtggatgtgccaccccgagtatcccgac
ggagtttactggattgaccccaaccagggatgccacagagatgcgtttaaagtgttctgc
aactttacagcagaaggtgaaacatgtctccagccgcacagcagcgtacagacggtcaaa
atggcttcgtggagcagagagaaaccaggaacctggttcagccagtttaagaagggctca
cagttctcttatgtggatgtggatggaaaccccgttcacatcgtgcagctgggcttcctg
aagctcttgagcgccacggctcaccagagcttcacttacgtgtgtcagaactcggccggc
tggttcgacagcacctccttcagctacagacacgcgctgcgcttcagaggcagcaacgga
gaggagctgacgcagcagaacgcacattacatccagcccacgatcgacggctgtcagtcg
cgctcggggcaggaccgcaccgttctggaggtggactctgcgcagtcggacgctctgccg
ctcgtggacgtggccgtgacagatttcgggagcgcgaaacagaagtttggcttcagcgtg
gggaaggtttgcttcaacggctag
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integrated database retrieval system
