Onychostoma macrolepis: 131551379
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Entry
131551379 CDS
T09350
Symbol
polr2a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
omc
Onychostoma macrolepis
Pathway
omc03020
RNA polymerase
omc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131551379 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
131551379 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omc03021
]
131551379 (polr2a)
03400 DNA repair and recombination proteins [BR:
omc03400
]
131551379 (polr2a)
Enzymes [BR:
omc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131551379 (polr2a)
Transcription machinery [BR:
omc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131551379 (polr2a)
DNA repair and recombination proteins [BR:
omc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131551379 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
131551379
NCBI-ProteinID:
XP_058650292
LinkDB
All DBs
Position
12:complement(15250204..15263061)
Genome browser
AA seq
1984 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILVKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFDYTNDRALRRTLQEDVVKDVMTNAHVQSALEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPVRVVEGVHELSKKLVI
VNGEDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPVLSNFAQIQSHFSKYSPTSPSYSPTSPNYSPTSPSYSPTSPTYSPTPSYS
PTSPNYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSP
SYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTP
TSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSD
EENN
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaacttaaacggatgtccgttactgaagggggcatcaag
taccccgagaccacagaaggaggacgccctaaactggggggacttatggacccccggcaa
ggggtaattgaaaggtcaggcagatgccagacgtgtgcaggtaacatgactgagtgccct
ggtcatttcggtcacattgagctggctaagccagtctttcatgttggcttcatcacaaag
atcatgaaggtcctccgatgtgtctgcttcttctgttcaaaacttcttgtggacgcgaat
aatccaaaaatcaaagacatcttggtcaagtcgaaggggcagccgcgtaagcgtctgacc
cacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatggacaac
aagtttggagtggagcagcaggagactgaagaagacctcaccaaagagaagggtcatgga
ggatgtggcaggtaccagccacgtatccgtcgctctggcctggagctgtatgctgagtgg
aagcacgtgaacgaagactcacaggagaagaagattctccttagccctgaacgtgtgcat
gagatcttcaaacgcatttcagatgaagaggacatgatcttgggaatggaccccaaatac
gcccgtcctgagtggatgattgtcactgtgttgcctgtgcctcctcttgctgtgagaccg
gctgtggtcatgcagggctctgctagaaaccaggatgatttaacacacaagttggctgac
attgtgaaaatcaataaccagctgaagcgaaatgaacagagtggagctgcagcgcatgtt
atagcagaggatgtcaagctgcttcagttccacgtggccactatggtagacaatgaactg
ccaggtctacctagggcaatgcaaaagtctggtcgtccactgaaatctatcaagcagagg
ctaaagggtaaggaaggacgtgtcagaggtaatttgatggggaagcgtgtagacttctcc
gcccgaactgtcatcacacctgaccccaacctgcagatcgaccaggtgggcgttccccgt
tccatcgccgcaaacatgacattccctgagattgtcacaccctttaacattgacagactc
caagagcttgtgaggagaggtaacagtcagtaccctggagccaaatatatcatccgagac
aacggggacagaattgacctgcgattccaccctaaaccaagtgaccttcaccttcagatt
ggatacaaagttgaaagacacatgtgtgatggggacattatagtgttcaacagacagcct
acgctgcacaaaatgtctatgatgggccacagagtgcgaatcttgccttggtcaacgttt
cgactcaacctcagtgtgacaaccccatacaatgctgactttgacggcgatgagatgaac
ctgcacttgccacagtccctggagacccgtgctgagatccaagagctggccatggtgcct
cgtatgattgtcacaccacagtccaacagacctgtcatgggtattgtgcaggacacactg
acagctgtgcgcaagttcaccaagagagacgtcttcttggagaggggtgaggtgatgaac
ctcctcatgtttctctccacatgggacggcaaagtgccccaacccgctatcttgaagcct
cgacctctctggactggcaaacagatcttcagcctgatcatccctgggcacattaatgcc
atccgcacacacagcactcaccctgatgaagaggacagcggaccttacaaacacatctcc
cctggagacactaaggtgattgtggagaacggtgagctgatcatggggatcctgtgtaag
aagtcattgggaacctcagctggctctcttgtccatatctcataccttgagatgggccat
gacatcacacgactcttctattctaacatccagaccgtcgtcaacaactggctgctcatc
gagggtcactctattggtattggagactccattgccgataaggcgacatatcaggacatt
cagaacacgattaagaaagccaaacaggatgtgatagaagtcattgagaaagcccacaac
aatgagttggagcccaccccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcattctgaacgatgctcgagacaagactggatcctctgcccagaagtcattgtctgag
tacaacaatttcaaatccatggtggtggctggttcaaaaggctctaaaattaacatttct
caggttattgctgtggtggggcagcagaacgttgagggtaagcgaatccccttcggtttc
aagcatcgcactctccctcacttcattaaagatgactatggtccagagagtagaggcttt
gtagaaaactcctatctggccggtctcacaccaactgagtttttctttcacgccatggga
ggcagagagggtctgatcgacacagctgtcaaaactgctgagacaggttatattcagcgt
cgtctgatcaagtctatggagtctgttatggtaaagtatgatgctacagtcagaaactcc
attaaccaagtcgtccagctgaggtatggagaggatggtctggcgggagaggctgtggag
ttccaaaacatggctacccttaagccatcccacaaagcctttgagaagaagttcaagttt
gattacaccaatgatcgagctctccgccgcactctacaggaagatgtggtgaaagatgtg
atgaccaatgcccatgtccagagtgctcttgagagagagtttgagaagatgaaggaagac
cgagagatcttgagggccattttccccacaggcgacagcaaggtggtactaccgtgcaat
ttggccagaatgatctggaatgctcagaagattttccgcatcaatcctcgaacaccaact
gacctcaacccagtgagagtagtggaaggagttcatgagctgagtaagaagctggtgatc
gtaaatggtgaagaccagttaagcaggcaagcccaggagaacgccactctgctgttcaac
atccacctgcgctccaccctgtgctccaagcgaatgactgaggagttccggcttagcaca
gaggcttttgattggctgctgggagagatcgagaccaaatttaaccagtccattgctcac
cctggtgagatggtaggtgctctggctgcccagtctctgggagagcctgctactcagatg
accctgaacacattccactacgccggtgtgtccgccaaaaacgtcactcttggtgtgcct
cgactcaaagagcttatcaacatctccaagcgacccaagaccccctccttgaccgtcttt
ctcctgggccaagcggcccgtgacgcagagagggccaaagatatcctgtgtcgtttggag
cacacaaccctgcgcaaggtcactgccaacacagccatttattatgaccccaacccacag
aacactgtggtgactgaggatcaggagtgggtcaacgtgtactatgagatgcctgacttc
gacgtgacccgcatttcaccctggctgctgcgtatcgagcttgaccgcaaacacatgact
gaccgtaaactgactatggagcagattgcagagaagatcaatgcaggatttggtgatgat
cttaactgtatcttcaatgatgacaatgctgagaaactggttttgcgaatccgcatcatg
aatagtgacgagaacaagtttcaagaggatgaggaggtagtggataagatggatgatgat
gtcttccttcgctgcattgaatccaacatgctgaccgacatgacactgcaaggcattgag
cagatcagcaaggtgtacatgcatctaccacagactgacaacaagaagaaaatcatcatc
acagaagaaggagagtttaaagctttgcaagagtggatcctggaaaccgatggagtcagt
ctcatgagggtcctcagtgagaaggatgtggaccctgtcagaaccacctccaacgacatt
gtggagattttcactgttcttggtattgaggctgtgcgcaaggctctggaaagagagttg
taccatgtcatctctttcgacggttcttatgttaactaccgccatcttgccttgctttgt
gacacgatgacctgcagaggtcacttgatggccatcactcgtcacggtatcaacaggcag
gacactggaccgctaatgaagtgctcttttgaagagacggtggatgtgttgatggaagcc
tcatctcatggtgaatgtgacccaatgaaaggagtgtctgagaatatcatgctggggcag
ctggctcctgcaggcactggttgctttgacttgctgttggatgctgagaagtgcaagtat
ggtatggagattcccaccaacatccctggtatcagtgttgcaggacccacgggtatgttc
tttggctctgctcccagccccatgagtggcatgtctcctgccatgactccctggaacaca
ggagccactcctgcatatggtgcttggtctcccagtgttggaagcggaatgacaccaggt
gctgcaggcttctctcccagcgctgcgtctgatgccagcggcttctctcctggttattct
cctgcctggtctccaactcctggatctcctggatcccctggaccagctagcccttatatc
ccctcaccaggagccttgtctccaaattactctccaacatctcctgcctacgagcctcgt
tctcctggtggatacaccccacagagccctggttactctccgacctctccatcatactct
ccaacttcgccatcttattctcccaccagtccaaactacagccccacatctccgtcctac
tcacccacatcaccctcctactctccaacttcgccgtcttattctccaacatctccaagc
tactctccgacttcaccttcttactccccgacttcaccgtcttactccccgacttcacca
tcatactcgccaacatcccccagctatagcccaacgtcccccagctacagcccaacctca
ccgagttacagccccacgtctccgtcttattccccaacttctccatcttattccccaacc
tccccgtcttactctcccacctctccaagctactctccaacctccccgtcctattcccca
acatctccgagctacagccccacttctccagtactctccaacttcgcccaaatacagtcc
cacttctccaagtactctccaacttcgccatcttattctcccaccagtccaaactacagc
cccacatctccgtcctactcacccacatcccctacctactctccaaccccatcttattct
cccaccagtccaaactacagccccacatctccgtcctactcacccacatcaccctcctac
tctccatccagtccacgttacaccccgcagtctcccacctacaccccaagctcgccttct
tacagcccaagttccccatcctactcccccacctctccaaaatacacccccacctccccc
tcctacagtcccagctctcccgaatataccccaacatcccccaaatattcccccacttct
ccgaagtactctccaacttcgcccaaatacagtcccacttctccaacctactccccaact
acacccaagtacagccccacttcccctacttattctccaacctctcctacctacacccca
accagccccaaatattcccccacctctccaacttactctccaacatctccaaaatactca
cccacatcccctacctactctccaactagtcccaagggctccacctacagccccacttct
cccggctacagccccacctctccaacctacagcccagccatcagccctgacgacagcgac
gaagaaaataattaa
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integrated database retrieval system
