Onychostoma macrolepis: 131553717
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Entry
131553717 CDS
T09350
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
omc
Onychostoma macrolepis
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omc03000
]
131553717 (rc3h1b)
04121 Ubiquitin system [BR:
omc04121
]
131553717 (rc3h1b)
Transcription factors [BR:
omc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
131553717 (rc3h1b)
Ubiquitin system [BR:
omc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131553717 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
DUF2570
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
131553717
NCBI-ProteinID:
XP_058654545
LinkDB
All DBs
Position
02:4387705..4419595
Genome browser
AA seq
1104 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVVLITCPEDTKHYDEARQCVEELALYLKPLSSARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARVPCTAGLLPEDVVPLEPGRKASSL
TNGGPLPQLIPRGTDPSTYDLLLKPKMDATSLSAPGSPPDSLDKCSLALTPHPVPHPRAE
HLPMSKQVPVMPRGAPQMYPQQQPELFYPEPARPPPSGSQYDAQYPTGNPYPYQPPQYGP
PRYIRNPPPPGEPPYPEPYPGYGPDRQYPSHHSGPPFSAHTYAPPSHYSRRHGHYPAPPP
PFSQPRDDLVRMSPVPLDVPPAAMPPPPAGPAGSLYHSQEPSSRDRYPPDGYYTAGPHPS
QMRSHIGDPYSRSQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPSHPFPNDYPRE
YLEDGSKVFGSREPDYAGQYSPWSCDTIGSYIGSKDAKPKDVSSAVEMMNAEGKVLREPP
LDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYLTTGPVQAIASSQASGSKHMT
MTADYPYGNHGGWGGASYPQHQSINSQGHFSERLPVSAPDREQLKIELQQVNQQISQQTR
GMEAASNSMLLQREACALASQPAAGVKWSSGGTVSSEQLSLELDHVELEIKKRTREIAME
NQVAHEYKLKATENGQPDRKAPLEELSLALGEVSNGSSGMKPASSMGGSMLSLTNKTSSL
TLCSADQAASSSDLQKNGVVHSCS
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttgctgtgcccaatatgcacccagacg
ttcgaggagacggtgcgtcggcccatcagtctgggttgcggccacaccgtttgcaagatg
tgcctcaacaagctgcaccgcaaggcttgtccctttgaccagacggccatcaatactgac
atcgagcagctgcccgtcaactcggccctgctacagctggtcgggggtcaggtgcccaaa
cagcaacctgtggtgctcattacgtgtccagaggacaccaagcattatgatgaggcacgg
cagtgtgttgaggagctggccctctacctcaaacccctcagcagtgcacgaggagtgggg
ttaagtaatgctgctcagagcatgctgagccgccccatgcagaggaagttggtgactctg
gtgcactgtcagctggtggaagaggaaggacgggtcagggccatgcgggcggcccgttct
ctgggcgaaagaactgttactgagctcattttgcagcaccaaaacccccagcagctctcc
tccaacctgtgggctgctgtcagagccagaggctgtcagttcctgggccccgccatgcag
gaggaggcactaaagctggtgctgttggccttggaagacggatctgctctttccaggaag
gttttggttctctttgtggtccagagactggaaccaagatttcctcaggcctccaaaacc
agtattggacatgtagttcagctcctctaccgtgcctcctgcttcaaggtgactaagcga
gatgaggattcttcactaatgcagttgaaagaggagttccgcacgtatgaggcacttcgg
cgggaacacgactctcagattgttcaaatcgcaatggagggaggcctccgcatcgccccc
gatcaatggtcttctctgttgtatggagaccagtctcataagtctcacatgcagtccatc
attgacaagctgcagaccccggcgtcgtttgctcagagtgtgcaggagctgaccatcgca
ctgcagaggacgggtgaccctgccaatctcaaccggctgagacctcacctcgaattgctt
gctaacatcgaccccagtccagatgctcctcctcctacctgggagcagctggagaagggg
ctggtagcagtaaagacggtggtgcacggcctagtggacttcatccagaaccacagcaag
aagggtgccgacacgcaacagccaccacagcacagcaaatacaagacgtacatgtgcaga
gacatgaagcagaaaggaggctgtcccagaggagccagctgcacctttgctcattctcag
gaggaactggagaagtaccgcaaaatgaacaaacgtcttgctgcacgagtgccctgcacc
gctggcctgctgcctgaggatgtggtcccactggagcctgggcgaaaggcctcttcgctt
accaacgggggccctcttccccagctcatccccagaggcacagacccctccacatatgac
ctcttactcaagcccaagatggacgccactagcctgagtgctcctgggtcaccacctgac
tctttggataaatgtagcttggccctgacaccccaccctgtgcctcaccctagggcggag
cacttacccatgtccaagcaggtgccagtcatgcccagaggtgcgccacagatgtatcca
caacagcagcccgagctcttctatccagagccagccagacctcctccctcaggatctcag
tatgatgctcaatatccaacaggcaatccctacccgtaccaacctccgcagtatggccct
ccccgctacatccgcaatccgccgcctccgggtgagccaccttacccagagccctatcca
ggatacggcccagatcgccaatatccgagccaccactctggtccccctttctcagcccac
acatacgcaccaccctcccattacagtcgcagacacggacactatcccgcacccccacct
ccattttcccagcccagagatgacttggtcaggatgagcccggttcctttggacgttccc
ccggccgctatgcctccacctccagcagggcctgcaggttctctgtaccactcccaggaa
ccgtcatccagagacagatacccaccggacgggtactacacagctggaccgcatcccagc
caaatgaggtcccacataggagacccgtacagccgctctcagcccagtctggatgacttg
catcgcaggcgcaaagagctgcttgtccagctagaggagagaaaagtcatctctcctccc
ccgttcgctgcctctccaactctcccttcacacccgttccccaacgactaccctcgggag
tatttggaggatggctctaaagtctttgggagtcgggagccagactacgctgggcagtat
tccccctggtcatgtgacaccataggatcatacattggctccaaggatgctaaaccaaaa
gatgtcagtagtgctgtggaaatgatgaatgcagaggggaaagttctccgtgaacctcca
ctggacactcagcggcgctctgcggaagccaaagacgacgatcccatcattccctttggt
cctctgcccactgtgtctccttttggtgccatttcacgtacctctaaaacgggttacctg
accactgggcctgtacaggccatagcatcctcacaggcctcgggctccaaacacatgacc
atgacagcagactatccgtatggaaaccacggcggatgggggggagcgtcgtaccctcag
caccagagcatcaactctcagggacacttcagcgagcgtctgcccgtgtctgcccctgac
cgcgagcagctcaagattgagctccagcaagtcaaccaacagatcagtcagcagacccgc
ggcatggaggctgccagtaactctatgctcctgcagagggaggcgtgtgcgctggcgtct
cagcccgcggctggagtgaagtggtcttcaggtggcactgtgtccagtgagcagctcagc
ctggagcttgatcacgtagagctggagatcaagaagagaacccgtgaaattgccatggag
aatcaggtggcccatgaatacaagctgaaggccactgagaatgggcagcctgaccgtaaa
gccccgctggaggaactctctttagcattgggtgaggtgtctaatggatccagtggcatg
aagccagccagtagtatgggtggatctatgctgtcgctgaccaataaaacatcttctctc
accctctgctccgccgaccaagcagcaagtagctcagaccttcaaaagaatggtgttgtt
cactcttgctcttaa
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integrated database retrieval system
