Oleiphilus messinensis: OLMES_0577
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Entry
OLMES_0577 CDS
T04860
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ome
Oleiphilus messinensis
Pathway
ome03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ome00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLMES_0577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ome03019
]
OLMES_0577
03016 Transfer RNA biogenesis [BR:
ome03016
]
OLMES_0577
Enzymes [BR:
ome01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OLMES_0577
Messenger RNA biogenesis [BR:
ome03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OLMES_0577
Transfer RNA biogenesis [BR:
ome03016
]
Prokaryotic type
tRNA degradation factors
OLMES_0577
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
TTC3_9th
Motif
Other DBs
NCBI-ProteinID:
ARU54680
UniProt:
A0A1Y0I342
LinkDB
All DBs
Position
complement(627465..629456)
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AA seq
663 aa
AA seq
DB search
MLNSDALHQLKQLKKDIKASRNLATGRVKGSNSKFGFVTLNDTGKDIYLSADEMQKVFPG
DEVEIEILTNEKNKDYGVIERLIQSELSTFIGRVRKKNKNSFAEPDVPGLQRWLFIHPGK
LQNAQEGDFVRCKILQHPIRNGKPQVAVLDVVGAEKQVGIEKLYTISKHEVRDNWSQAIL
DECAQITDEVILREGANREDLTQLPFLTIDSAATQDMDDALYATATDTGWSLSVAIADPT
AFIAPESAIEKEAALRGSSVYYPGSVISMLPEHIANQLSSLVPDQNRLALVCKLEITAQG
DVDSFNITQAVVQSHGKLSYESVAQYIDNGDETGIQALLNDPAHLPALTTSLQYLKAISS
ALNQWRFSHALINDDRTDFRLKLNEQQKIEQIVRLEQTSAHKIVEECMIAANRCAARYLL
DNPGSQEAPGLFVAHTGIRQDKQSAIEQIIAEKVAPASPEVSQIGFSTLEDFITLLQLAE
RTPSEIPLRPLITRQLERSQLSPGAAPHFGMGLPHYTTFTSPIRKYNDFVVHRMIKAHLN
GKDAITVTPEQATNIQQAQQKARMAVNEMEQWLKCQYIKSLPADEVYDATITRCTSAGFQ
AKLDENGIDGFVSTKEMAGKYSFDAVYQTLKGPELTFVPEQKVRVKLDKVDQKRKQINFQ
IEV
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattcggatgccctccaccagctcaagcagttaaaaaaggatataaaagccagc
agaaacctggccactggcagagtaaaaggtagtaactctaagtttggtttcgtcaccctc
aatgataccgggaaagatatttacctgtcagcagatgaaatgcagaaggtattccccggt
gatgaagtcgaaattgaaattttgaccaatgagaaaaacaaagactacggtgtgattgaa
cgcctcattcaatccgagctctccacctttatcggccgagtaagaaagaaaaataaaaac
agcttcgcagagcctgacgtacctggactccaacggtggttgtttattcatccggggaaa
ctgcaaaacgctcaggaaggtgatttcgtccgctgtaagattctccaacatcccattcgc
aatggtaaaccacaggttgcagttcttgatgtggtgggtgccgaaaagcaagtgggtatt
gaaaaactctacacaatcagcaagcacgaagtcagggataactggtctcaggcaattctg
gatgaatgcgcacagattacggatgaggttattcttcgcgaaggtgcaaatcgggaagat
ctcacgcagctgccatttctgacgattgactctgcagccacacaggacatggatgacgcc
ctgtacgccacggcaacggataccggctggtctctatccgttgcgattgccgatccaacg
gcattcattgccccagagtctgccatcgagaaagaagctgcactgcggggtagttcggtg
tactatccgggtagcgtcatttcaatgctgcccgaacacattgccaaccagcttagttca
ctggttcccgaccagaaccgccttgcgctggtgtgtaaactcgaaattaccgctcaaggc
gatgttgacagcttcaatatcacccaggcagtggtgcagagtcacggcaaactcagttac
gaaagtgttgctcagtatatcgataatggtgatgaaaccggtattcaagcgctgctcaat
gacccggcccacctacccgcgttgactacatcgctacagtacctgaaagcaatcagtagc
gcgttgaatcaatggcgtttcagccatgccctaatcaatgatgaccgtacggacttccgg
ttaaaattgaacgagcaacaaaaaatagaacagattgttcgtcttgaacaaacctctgca
cacaaaattgtagaggaatgcatgattgcagcaaaccgctgcgctgcccgctatttgctc
gataacccgggcagccaggaagcccccggtttattcgtcgcacacacggggattcgtcag
gacaaacaatcagctatcgagcaaatcatcgcagaaaaagtcgcaccggcatcacctgag
gtgtcccagattggctttagtacactcgaagactttatcaccctgctacaacttgccgag
cggaccccatcggaaatccccctgcgcccgttgatcacccggcagttggagcgcagtcaa
ttatcccctggcgccgcccctcacttcggcatgggcctgccccactacacgacatttacg
tctcccattcgcaaatacaatgacttcgttgtgcaccggatgatcaaggcccacctcaac
gggaaagacgcgattaccgtaacccctgaacaggccaccaacatccagcaagcgcaacaa
aaggcgcgcatggcggttaacgaaatggagcagtggttaaaatgccaatacatcaagtca
ctgcctgcagatgaagtctatgatgcgaccataacccggtgcacctcagcaggattccag
gcaaaactggatgaaaatggtatcgacggatttgtttccacaaaagaaatggccggaaaa
tacagcttcgatgccgtgtatcaaaccctgaagggccctgaattaacctttgtacccgaa
caaaaagtaagggtaaaattggacaaagttgaccaaaaacgaaaacaaatcaacttccaa
atagaagtttga
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