Oleiphilus messinensis: OLMES_1076
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Entry
OLMES_1076 CDS
T04860
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ome
Oleiphilus messinensis
Pathway
ome03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ome00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLMES_1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ome03019
]
OLMES_1076
03016 Transfer RNA biogenesis [BR:
ome03016
]
OLMES_1076
Enzymes [BR:
ome01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OLMES_1076
Messenger RNA biogenesis [BR:
ome03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OLMES_1076
Transfer RNA biogenesis [BR:
ome03016
]
Prokaryotic type
tRNA degradation factors
OLMES_1076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
CSD
Med30
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ARU55161
UniProt:
A0A1Y0I421
LinkDB
All DBs
Position
1195836..1198529
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AA seq
897 aa
AA seq
DB search
MSNMKSDPHAQRESENYKKPIHSREYILDWLKGRKAAVTHFELCHEFDYEDADDVEALRR
RLIAMTRDGQLICNRRGGYLPVTSVDLIKGRVIGHRDGFGFVVPEDGGDDLFLSARQMQA
LFNDDVVLVRVDDVDHRGRRIASVVEVLERNTTEIVGRYYEDSGIAFVTPENVRISQDVI
IPREQSGEALHGQYVLVELTRQPTIRTKPLGRVIDVLGDHMAPGMEIEVAIRSHGIPFLW
GEEVKAEIADLSVDVTESDKKDRIDLRDLPLVTIDGEDARDFDDAVYCAPKRGGGWRLYV
AIADVSHYVRLGSALDEEARKRGNSVYFPGHVVPMLPEVLSNGLCSLNPQVDRLCMVCEM
TISQAGRLSGYRFYEAVMHSHARLTYTQVAKMLDTEVGEEGEALRERFADLVPHLNNLYA
LYKQLRIAREERGAIDFATTETRIEFGDERKIEQIVPVERNDAHRLIEECMLCANVATAR
FIAKHNIPSLYRVHEGPGEEKLQNLRSFIGELGLQMRGGETPTPADYQELILQIQDRPDF
SVIQTVMLRSMSQAYYGPENKGHFGLGFKAYTHFTSPIRRYPDLMIHRAIKSLIYKSSEL
LGGDAPRDYVPAPSPKPSDYPYPFDVPAMLEVGEGCSMTERRADDATRDVESWLKCEFLQ
QHVGDVYPGVISAVTSFGLFVELSDLFIEGLVHVSSLSNDFYHYDAVKHRLVGERTGTSY
RLGDLLEVQVVRVDLEERKIDYEIVGRSKAIKKKRNDARSQGGEDRTGKRKTKRLLDKLD
QYSREESRSHGDKAESKGELTRPVRKRKGSSKSKRDGESGEKSGSKKKSGSKARPGTQAK
TRSGAKTKSGSKAKTGIKSRAGTKSDAGAKVEAGVKKNVESKVRTKVKSKAKKGRKR
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatatgaaatctgacccccatgctcagcgggaatcggaaaactataaaaaaccc
atccacagccgtgaatatatccttgactggttaaagggtcgtaaagctgcggtcacgcac
tttgaattatgtcatgagtttgattatgaagatgctgacgatgtggaagcactgagacgg
cggctgattgcgatgacgcgggatgggcagttaatttgcaaccggagaggtgggtacctg
ccggttaccagtgttgatttgatcaaggggcgggttatcgggcaccgggatggattcggg
tttgttgtgccagaagatggcggcgatgatttgttcctcagtgcgcggcagatgcaggct
ttgtttaatgatgatgtcgttctggtacgcgtagatgatgttgatcatagagggcggcgc
attgcctctgtggtggaggttctggagcgaaataccacagaaattgtaggtcgatactat
gaagacagtggtattgctttcgttactcccgagaatgtaagaatttctcaggatgtgatt
atcccgcgagagcagtcaggcgaagcgttacacggacaatatgtgttggtggagctgacc
cggcaaccgactatccgaaccaaaccgcttggtcgtgttatcgatgttttgggtgatcac
atggctccgggcatggaaatcgaggtggcgattcgatcccatggcatcccttttctctgg
ggggaggaggtcaaagctgagattgccgatctgagtgttgacgttaccgagtccgataag
aaagaccggatagatctccgtgatttgcctctggtaaccatcgatggtgaggacgcgcgg
gatttcgatgatgctgtttattgtgcacccaagcgtggcggcggatggcgcctgtacgtt
gccattgctgatgtgtcccattatgtgcgtttggggagcgctcttgatgaagaagcccgt
aagcgaggtaactcggtttatttcccggggcatgtggtgccaatgttgcctgaggtgctt
tccaatggtttgtgctccctgaacccgcaagttgatcgtttgtgtatggtttgtgaaatg
accatcagtcaggcgggacggttgagcggataccgattttacgaagctgtcatgcattcc
catgcccggctgacctacacgcaggttgctaaaatgcttgacaccgaggtcggtgaagaa
ggtgaagcattgcgtgagcgttttgccgatttggtaccgcatttgaataacctgtatgcg
ctctacaagcaacttcgtattgcccgggaagaacggggggcgattgattttgcgaccact
gaaacccgtattgaatttggtgatgagcgaaagattgagcagattgtgccggttgagcga
aatgatgcgcaccgtttgattgaggaatgcatgctgtgcgccaatgtcgccactgcgcga
ttcatcgccaagcataatattccctcgttatatcgggttcacgaggggccgggggaggaa
aaattgcagaacctccgttccttcattggtgaacttgggctgcaaatgcgcggcggagag
acgccaacgccagcagactaccaggaattgatccttcaaattcaagatcgtcccgacttc
agtgtaattcaaaccgtgatgttgagatccatgtcccaagcctattacggcccggaaaat
aaagggcattttggcttagggttcaaagcgtacacgcactttacatcaccgatacggcgc
tatcctgacctgatgattcatcgtgcgatcaagtctctgatctataagtcatccgagctg
ttggggggggatgcaccaagagattatgttcctgctccgtcacccaagccctcagattat
ccttatccatttgatgtaccggcgatgttggaagtgggtgaaggttgctcaatgaccgag
cggcgagcggatgatgcgacccgggatgttgaaagctggttgaagtgtgagttcctgcaa
cagcatgttggtgatgtttatcccggtgtgatttctgcggtgacgtcctttgggttgttc
gtggagttatcggatctgtttattgaagggctggttcacgtctcgtctttgagtaatgat
ttttatcattatgatgcggtgaagcatcgcttggttggcgaacgaacgggaaccagctac
aggcttggcgacttgctggaggtgcaggttgttcgcgtagatcttgaggagcgtaaaata
gattacgaaatcgtaggtcgtagcaaagcaatcaagaaaaagcggaatgacgcaaggtca
cagggcggcgaagatcgtacagggaaacgaaaaaccaaacgacttttggacaagctggat
cagtactccagggaagaatcccgtagccatggcgataaagccgagagtaaaggtgagttg
acgagacccgtacggaaacgaaaagggtcttcaaagtcaaagcgtgatggcgaatctggt
gagaaatccggatccaagaagaaatccgggagcaaggcccggcctggcacacaggcaaag
accaggtcaggagccaagactaagtccggctctaaagcgaaaacaggtattaagtctcgg
gcgggtaccaagtcggatgccggagccaaggtcgaagctggtgtgaagaaaaacgttgaa
tccaaggtgcgcaccaaggttaagagtaaagcgaagaaaggtcgtaagcgttga
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