Oryzias melastigma (Indian medaka): 112136129
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Entry
112136129 CDS
T07439
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oml03009
]
112136129 (ddx56)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112136129 (ddx56)
Ribosome biogenesis [BR:
oml03009
]
Eukaryotic type
Pre-60S particles
Helicases
112136129 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DUF3638
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
112136129
NCBI-ProteinID:
XP_024113491
Ensembl:
ENSOMEG00000022072
UniProt:
A0A3B3DY62
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Position
LG12:complement(2173648..2182633)
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AA seq
559 aa
AA seq
DB search
MACERLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AVPIIQHILTSKQSVREQAVRALVLVPTKELGQQVQTMMRQLTSFCSRDVRVADISSKAD
VSSQRPILMEKPDVVVGTPSRVLAHINAHNLDLQASLEVLVVDEADLIFSFGFEADLKSL
LCHLPKIYQSFLMSATFTEDVQALKELLLHNPMVLKLQGSQLPDSSQLQQYTIKCEEEDK
FLLIYTLLKLRLVRGKTLLFVGAVDRSYRLKLFLEQFSIPACVLNSELPVQSRCHIITQF
NQGFYDIIIATDEQSLSPPAGSSQTKGKEKKNANKGGKAKDKEFGVSRGVDFQNVANVIN
FDFPPTVESYIHRVGRTARADNQGTALSFISHTELPLLAEVEEALSTDNSESVLKPYQFR
MEEIEGFRYRCRDAMRAVTKQAVREARLKEIKQELLNSEKLKTYFDDNPRDLELLRHDKD
LHPAVVKPHMKNIPDYLIPQTLRGVVNPLSGRRKRRRIKPPVEGVVRSSFKKNDPSRNPL
KSFRYTGGRNKAPRAGKSS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcatgcgaacggctgcagtttcatgaaatgggtttagacgaccgcctgctaaaggcg
gtcgcagacctgggctggtctcagcccaccctgatccaggagaaagccattcctctggct
ctggaggggaaggaccttctggctcgagctcggaccggatctgggaaaaccgccgcctac
gccgttcccatcatccagcacatcctgacctccaaacagagcgtccgggagcaggcggtc
agggcgctggtcctggttccgaccaaagagctgggccagcaggtccagaccatgatgagg
cagctgacgtccttctgctccagagacgtccgagtggccgacatctccagcaaggcggac
gtttcctctcagaggcccatcctgatggagaagcctgacgtggtggtggggacgccgtcc
cgtgtgctcgcccacatcaacgcgcacaacctggacctgcaggcctccctggaggttctg
gtcgtggacgaggccgacctgatcttctcgttcggcttcgaggccgacctcaagagcttg
ttgtgccatctgccaaagatctaccagtccttcctgatgtcggccacgttcacggaggac
gtccaggctctgaaggagctgctgctgcacaaccccatggtcctgaagctgcagggctct
cagctgccggacagcagccagctgcagcagtacaccatcaaatgtgaggaggaggacaag
ttcctgctcatctacacgctgctgaagctgaggctggtccgcgggaagacgctgctgttc
gtgggcgccgtggaccgcagctaccgcctcaagctcttcctggagcagttcagcatcccc
gcctgcgtcctcaactccgagctgcccgtccagtccaggtgtcacatcatcacccagttc
aaccagggcttctatgacatcatcatcgccaccgacgagcagagtctgagcccgccggcg
ggttcctcccagaccaaaggaaaggagaagaagaacgccaacaaaggagggaaagctaaa
gataaggagtttggagtctccagaggcgtggacttccagaacgtcgccaatgtcataaac
tttgacttccccccgacggtggagtcgtacatccatcgagtgggcagaacggcgagagcg
gacaaccagggcacggcgctgtccttcatctcccacacggagctccccctgctggccgag
gtggaggaggctctgagcacagacaacagcgagtcggtcctgaagccgtatcagttcagg
atggaggagatcgagggcttcaggtaccgctgccgggacgccatgcgcgccgtgaccaag
caggcggtgagggaggccaggctgaaggagatcaagcaggagctgctcaactcagagaag
ctgaagacgtactttgatgacaaccccagagatctggagctgctgagacacgacaaagac
ctccaccccgccgtggtgaagccgcacatgaagaacatccccgactatctgattccccag
acgctgaggggcgtggtcaacccgctgtccggcaggaggaagaggaggaggatcaaaccc
ccggtggagggagtggtgaggagcagcttcaagaagaacgacccgagcagaaacccgctg
aagagcttccgctacactggaggcagaaacaaagcacccagagctgggaagtcgtcgtga
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