Oryzias melastigma (Indian medaka): 112136290
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Entry
112136290 CDS
T07439
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112136290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112136290
03021 Transcription machinery [BR:
oml03021
]
112136290
03036 Chromosome and associated proteins [BR:
oml03036
]
112136290
Transcription factors [BR:
oml03000
]
Eukaryotic type
Helix-turn-helix
ARID
112136290
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112136290
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112136290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
112136290
NCBI-ProteinID:
XP_024113663
LinkDB
All DBs
Position
LG11:2831887..2848122
Genome browser
AA seq
2240 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDQKEATGEKQSDKKQPGLDSGSPGRGDLQDGADGGN
AGGGGEPEMKNGNGNPPRAINNNQNDSVEPEGNNHPGLVHHHGPTFPPPSYSYSQHYGRA
PFHQHGGQQSPGMAAASGPSMMDPYPPNSHEHGYPNSYNNYSPFAGRTSYQGQGYGAMNS
PRSSQPPAAGGQSGKQQPPGASAAMATSYNNQRYNIGNPQPTSTPTLNQLLTSPSSARSY
PNYPQGDYNNQEGPNKAAGDMSGSQYSGVHPSWSQRGHHPPPMSPGNTGQPASRNQPPSP
MDQLGKIRGQPYGGPNPYPSQQQGPASGPGPQQGGSYAGQGYGPPGPQRYPMGIQSRTPG
AMGGMQYGQQMSAYGQQGPGGYSQQNQGYYAQHGPPPNAGQQQPPYQSQSSSGSPYPQQG
HPSQPSGQHGQPGPPFPQTQVPHSGSAGQPSYSQPPQSQPGQQPYVPSQQQQQQTGPGPQ
NQPGPQGQPGYPQPPGPEQPPAQQQAPPQQQQQQQAGGLPSQAQQPPGHGQQSQPSPYSQ
TPPLQQQQSPYQRFPPPSQNQDVSQDSFSSQSSIPPSGQSNKSGPEDSMQGRPSSLPDLS
GSIDDLPTGTEAALSPGVSTSGVSSSQGEQSNPAQSPFSPHTPPHLPGIRGPSPSPVGSP
TSVTPSRSGPLSPTAGPGSQMPPRPPSVQSDSIMHPSMNQSPMGQDRVYIRNPQMPPYGS
PGQPGSALSPRQSSGGHMHGSMGPYPQNSTMGNYVPQGGQYGPHGYPRQPSYTGMPNTNY
PSGPSMGGSMNPMPGQGSGGPYGTMPPSRIGPGPQIGARPYGPGMGSNMGGMPPQMGSGM
CPPGMNRKDGAPPMHHGPSNSIHNRPPGYPNMSPGMMGTGSPYGPGMNSMHGVMNQGGAG
PYPMNANMPNSTPGGAPGPDFGMEKIPPAQKMNNKVDGTPKQESKKKSSSSTITNEKITR
LYELGPEPERKMWVDRYLAFAEEKAMGMHNLPAVGRKPLDLFKLYVSVKEIGGLTQVNKN
KKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKVERGEDPPPDFFNTDTKKNQPKIQ
PPSPAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHPQMPQMPGVRNSVSLQDPFAD
GSDPAFSRRNAMTPNSQGYQSGMGNAEMMSRMGPYESSKDPFGGMRKAGEQFMPPGPNSG
MGEQYNRGPPAPMSNMPMGQRQQFPYGYDRRQEPGMGPEGTMASGAPQPNMMSSGGDAGM
YSPSRPPSQQRHDSYTNQYPGQGAPPGGPYPNQHPGMYQQQQNYKRPVDGAYGPPAKRHE
GEMYNVPPYSGQQQPGPQSAGHQGQQDMYNQYNAYPGGERRPPGPQGQFPFPFGRDRGPS
AAGPNSQSSMPPQMMPSPMPSGPDGPQAQMWQGRNDMGYPNYPNRQGPAGPGQGPGYHGM
NRSEEMMPADQRINHEGQWPGHVNRQQPPFGPVGSGPPMTRPLPSTYQASQNHIAQVSSP
APMPRPIESRTSPSKSPYMHPGIKVHKAGPPVPASHIGQAPVQQPMIRRDMAFPPGSVEA
SQPHLKPRRRLTMKEIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSSISTFNLCQ
LPGFLELIVEYFRRCLIQIFGILKEYEVGDAAQRTLIDPNAAEDSEEDPSMGEGEDMDTE
DEDEDDEEPERPADAPSLVRVKEEEEESSLKDKYSEDEEEEKAPNKLPAGSSHNASSISE
KPRQASKFDKLPIKLVRKKNPFRLNHLSKLGQLQSFDSGLLHWSIGGGDTTEHIQTHFES
HMERLKLPKRPAALREVRKKVQGAAVDSSGDGKSRHQPPTSEPPKSPADKSPLPTGAPVT
ATIDDVLSARPGSVTEEVVRGGAEEQKENGKFLFSINPDLKNRRNIKILEDEPHSKDETP
LSTLSDWQDSLARRCICISNIVRSLSFVPGNDLEMSKHPGLLLLLGRLVLLHHRHPERKQ
APVTYEKEEEEDEGVSCERDEWWWDCLEVLRENCLVTLANISGQLDLSIYPESICLPLLD
GLLHWAVCPSAEALDPFPTLGPHSSLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEK
LYGSLVRLVGERKVAVCREMAVVLLANLAHGDTLAARAIAVQKASVGNLLGFLEDSLAAT
QYSQSQNPLLQMQGGAQFEPTSVDMMRRAARALHALAKVEENHSEFTLYESRLLDISVSP
LMSSSVSQVICDVLFLIGQS
NT seq
6723 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactcttaacactagcccgccttctgaactgaaa
aagccggatcgagaccaaaaggaagcgacgggggagaaacagtccgataaaaagcagccg
gggttggacagcggatcgccgggccgtggggatctgcaggacggggccgacggtggaaat
gctgggggaggaggggagcctgagatgaagaacgggaatgggaacccgcccagagccatc
aataataaccagaatgactccgtcgaaccggagggaaacaaccaccctggactggtgcat
caccacggccccacatttcctcctccttcgtactcgtacagtcagcattacggtcgggcc
ccttttcatcaacatggcggacaacaaagccctggcatggcagctgcatcggggccgagc
atgatggacccgtatcccccgaactcccacgaacacggctaccccaacagttacaacaac
tacagcccgttcgcgggcaggacttcctatcagggccagggctacggggccatgaattcc
ccgcgcagcagccagcctccggcagctggggggcagtcaggcaagcagcagccgccggga
gccagcgcggctatggctacatcctataataatcagaggtataacattggaaacccgcag
cccacgtccacgccgaccctcaaccagctgctgacctcccccagctccgccaggagctac
cccaactacccccaaggagactacaacaaccaggaagggcccaacaaggcggcgggagat
atgagcggcagtcagtacagtggggtccatccgagctggtcgcagaggggccaccaccca
ccccccatgagcccggggaacaccggacagccggcaagccggaaccagccgcccagcccg
atggaccagctcgggaagatccggggacagccgtacggagggcccaacccctacccctcg
cagcagcaagggcctgcctctgggcccggaccgcagcagggaggctcgtacgcggggcag
ggctatgggccgccaggtcctcagagatacccgatgggaatacagagccgcacgccaggc
gccatgggagggatgcagtatggacagcagatgtctgcgtacggacagcagggcccaggg
ggctacagccaacagaaccagggctactacgctcagcacggcccccctcccaatgctggc
cagcagcagcctccgtatcagagccagagcagctctgggtccccttatcctcagcagggc
cacccctcccaaccttcaggccaacatgggcagccaggacccccttttccacagacccaa
gtgccccacagcggctctgcggggcagccctcctatagccagcccccacagtctcagccg
ggacagcagccctatgtgccctcccagcagcagcagcagcagacgggtccaggcccacaa
aatcagccgggccctcaaggccagcctgggtacccacaaccccccgggccagagcagccg
ccagcacagcagcaagcacccccccagcaacagcagcagcagcaagcaggcggtctgcct
tcccaagcccagcagcccccaggtcacggccagcaaagccagccatcaccttactcccag
accccccccctgcagcagcagcagtcaccatatcagaggttcccccctccctcacagaac
caggacgtctcccaggattccttcagctcccagtccagcattcctccgtctggccagtcc
aacaagagcggtcctgaggacagcatgcaggggcggccatccagcctgccggatctctct
ggctccatcgacgaccttcccacgggcacggaggcggccctgagtccgggggtcagcacg
tcgggggtgtccagcagtcagggcgagcagagcaacccggcccagtcgcctttctctccg
cacaccccccctcaccttccaggcattcgcgggccctccccctctcctgttggctctccc
acaagcgtcaccccttctcgcagcggccccctctcccccaccgcagggccagggagccag
atgccgccgcggccccccagcgtccagtctgacagcatcatgcatccttccatgaaccag
tcacccatgggtcaggacagggtgtacatccgtaaccctcagatgcccccgtacggctcc
cccggacagcctggctccgccttatctccacgccagtcttcaggaggccacatgcatggc
agcatgggaccttacccccagaacagcaccatgggaaactacgtccctcaggggggccag
tatggcccacacggttatcccagacagcccagctacacgggaatgcccaacaccaactac
cccagcgggcccagcatgggtggctccatgaaccccatgcctggccagggcagcgggggc
ccgtacggaaccatgccaccgagcagaataggtcccggaccgcagattggagctcgaccc
tacggacctggaatgggctccaacatgggtggaatgcccccccaaatgggatccggcatg
tgtccacctggcatgaacaggaaggacggtgccccccccatgcaccatggaccctcaaac
tccatacacaacaggccgccgggctaccccaacatgtcccctggcatgatggggacgggg
tctccgtatggcccagggatgaacagcatgcatggtgtcatgaatcaggggggggcgggg
ccttatcccatgaatgcgaacatgcctaacagcacccctggaggggctccaggccctgac
tttggcatggaaaaaatccccccagcccagaagatgaacaacaaagtcgatggtactccc
aaacaagaatccaaaaagaagtcgagttcttccaccatcaccaacgagaagatcactcga
ctgtatgagctgggcccggagccggagaggaagatgtgggtggaccggtacctggcgttt
gctgaggagaaggccatgggcatgcacaaccttcccgctgtgggccggaagcctctggat
ctctttaagctctacgtctctgtgaaagagatcggcggcctgactcaggtgaacaagaac
aagaagtggagggagctggccaccaacctgaacgtgggcacgtccagcagcgccgccagc
tcgctcaaaaagcagtacatccagtgtctgtatgccttcgaatgcaaggtcgagcgcggt
gaggacccgccccctgacttcttcaacacggacaccaaaaagaaccagcccaagatccag
cccccgagtcctgctggttctggatccctccagggaccccagactccccagtccaccagc
agctccatggcagaggggggggacctcaagccccccactccggcttccaccccacatcca
cagatgcctcagatgcctggtgtcaggaacagcgtcagcctgcaggacccctttgccgac
ggaagcgatccggctttttccagacggaacgccatgactcccaactctcaggggtaccag
tcagggatgggcaatgcagagatgatgagccggatgggtccctacgagtccagcaaggac
ccctttggaggcatgaggaaagctggagaacagttcatgcccccgggccccaacagcggg
atgggggagcagtacaaccgaggacccccggcccctatgagcaacatgccgatgggccag
cggcagcagttcccgtacggatacgaccgaagacaggagccggggatgggtccggaaggc
accatggcttcaggagctcctcagcccaacatgatgtcttctggaggagacgccgggatg
tactcgccgagtcgccccccctctcagcagcggcacgactcctatacaaaccagtaccct
ggtcaaggagcgccccctggtggtccatatcctaaccaacatccaggaatgtaccaacag
cagcagaactacaagcgccctgtggatggggcgtacggccctccagccaaacgtcacgag
ggagaaatgtacaacgttcccccttacagtggccagcagcagccgggacctcagtctgct
gggcaccaggggcagcaggacatgtacaaccagtacaatgcgtaccctgggggagagcgc
aggcctccaggtccgcagggccagttccccttcccattcggacgggacagagggccgtca
gctgcaggcccgaactcccaatcctctatgcctccccagatgatgcccagccccatgcct
tcaggtcccgatggcccccaagcccagatgtggcagggccgcaacgacatgggctatcct
aactatcccaaccgccagggacctgctgggccgggtcaggggcctggctaccacggcatg
aaccgctcagaggagatgatgccagcggaccaacgcatcaaccacgaggggcagtggccc
ggccatgtcaaccggcagcagccgccctttggccccgtcggatctggacccccgatgacc
aggcccttaccttccacctaccaggcttcccagaaccacattgctcaggtttccagcccg
gcccccatgccccggcctatagaaagcagaacgtcacccagcaagtccccttacatgcac
cccggcattaaggtgcacaaagccggacctccggtcccggcctcccacatcggccaggcc
ccagtgcagcaacccatgatccggcgggacatggccttccctcccggctcggtggaggct
tcccaaccccacctcaagccccgccgaaggctcaccatgaaagaaataggcactcccgag
gcttggcgagtgatgatgtccctgaagtcgggcttgttagcggagagcacgtgggcgttg
gacaccatcaacatcctgctgtacgatgacagcagcatctccaccttcaacctctgtcag
ctgccggggttcctggagctgatcgtggagtacttcagacgctgcctcatccagatcttt
ggcatcttaaaggagtacgaggtcggagacgccgcccagcgcaccctgattgaccccaac
gctgcagaggactctgaggaggacccctccatgggcgagggtgaggacatggacacggag
gacgaggacgaagacgacgaggaaccagaaagacctgctgacgccccgtcgctggtccgg
gtcaaagaggaggaggaggagagctccttgaaagacaagtattcagaggatgaggaggag
gaaaaggcgcccaataagctgcctgcagggtccagccacaacgccagcagcatctcggag
aagcccaggcaggccagcaagtttgataaactccccatcaagctggtgcgcaaaaagaac
ccgtttcgcctcaatcacctgtccaagctcggccagctgcagagcttcgacagcggtctg
ctacactggagcatcggcggtggtgacactactgagcacatccagacccactttgagagc
cacatggagcgtctgaagcttccgaagcgtccagccgctctccgcgaggtccgcaagaag
gtgcagggagccgcggtagacagcagcggcgatggcaagtccaggcaccaacctccaacg
tctgagcctcccaagtccccagctgataagagtccactccccaccggggcgccagtcacc
gccaccatcgacgatgtgctgtcggcccgcccagggtcggtcaccgaggaggtggtccgc
ggaggagccgaggagcagaaggagaacggcaagtttctgttcagcatcaacccagacctg
aagaaccgccgcaacatcaagatcctggaggacgagccccacagcaaagacgaaacgccg
ctcagcacgctgtcggactggcaggactcgctggcgcggcgctgcatctgcatctctaac
attgtgcggagcctgtccttcgttcccgggaacgacctggagatgtccaaacacccgggc
ctgctgctccttttgggccgcctggtgctgcttcaccaccgacacccggagcgcaagcag
gcgccggtcacctacgagaaggaggaggaggaggacgagggcgtgagctgtgagcgagat
gagtggtggtgggactgcctggaggtgctgagagagaactgcctggtcactctggccaac
atctctggccagctggacctctccatctaccccgagagtatttgtctccccctgctggac
ggcctgctgcactgggccgtttgcccttctgcagaggccttggacccattccccacgctt
ggcccccacagctccctgtccccccaaagactggtcctggagaccctcagcaagctcagc
atccaggacaacaatgtcgacctcattctggcaacgcctccgttcagccgcttggagaag
ctttacggctcgctggtacgcctggtcggcgagcgcaaggtggcggtctgccgggaaatg
gcggtggtcctgctggccaacctggcccacggcgacacgctggcggcccgcgccatcgct
gtacagaaggccagcgtgggcaacctgctgggcttcctagaggacagcttagccgccacg
cagtactcgcagagccagaacccactgctgcagatgcaggggggggcccagttcgagccc
accagcgtggatatgatgcggcgggcggcccgggcgctgcacgccttggccaaggtggag
gagaaccactcagagttcacactgtacgagtcgcggctgcttgacatctctgtgtcgccg
ctcatgagctcctccgtgtcccaagtaatctgtgacgttctgttcctgattggccaatca
tga
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integrated database retrieval system
