Oryzias melastigma (Indian medaka): 112136346
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Entry
112136346 CDS
T07439
Symbol
si:dkey-13n15.2
Name
(RefSeq) protein transport protein Sec24C isoform X1
KO
K14007
protein transport protein SEC24
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112136346 (si:dkey-13n15.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112136346 (si:dkey-13n15.2)
Membrane trafficking [BR:
oml04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
112136346 (si:dkey-13n15.2)
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Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
112136346
NCBI-ProteinID:
XP_024113748
Ensembl:
ENSOMEG00000010523
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Position
LG9:complement(1265508..1275291)
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AA seq
941 aa
AA seq
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MDVPTNHLNQPPAQQWGVQGGWPPAQGPVYNPLPSFHRLSLGPPQTWGSSPHSRGDPSGR
DQLRLGPEAQLSAANPPDLRGGNAPPCRPPHPPQQVCPSAAPPSIVQAPPLQTPESAASG
PAAEGANPRPSGGFDSASAHLQLQFPAGNTNFIPPGAEEDRHASQQHPPSASRYGLDPDS
LPSAVKVMLEDRAEWWGRTFISEPFSPLPPLPTTSCVTEDRGNASPSVIRSTCYCLPCEA
QAGALSRLPLGALVTPLGRPNAAEAPPPLCEDSERVDGCSSCGASMCPPMSWQDCGQRFY
CPFCGKLNEVAWKHYQPTTGVNGVRVDADLRPELSLGSYEVISPQKEEPAALLFAVDVSA
SAQRGGHLEFITQQIQAVLSSMSREAGSCSVPVGLMSYDSRIHLYDLSPQRSRPHMLVIA
DTEEVQLPVREGLLVPLRDAIESLSSVLQLLPHVGADHDGSSGAPVELPIQAGLAVLQGL
KSPGKLLIFHSADLMEAGNSNNSSSGLFGSNKPKSVFQPSDQSVSLAKECVIQGCGVHLF
VLSQQDVGGAWPGHIPHLTGGALTSYDHLQGPPDQDRFGRDLRRTVETDCGFRAELQIFV
SKDLRVSGCYGMFVPGPSPAHVTMATLDRSTTLAVELAHTRTLEEARGAVVQTVLSYTLR
TGQRRTRVHTLTLRCSRHLQETFRNFQAQTLLSFYCKKMYCSVLERPLQELREELQTDMT
AALASYRKHCSSSCVSAGQLVLPRFLRALPVFINSLRKSEVLLPGLRSSIHQRLQLRCRV
LAMDPRSTVQHFYPPLLPLLPSDGDSCGSSPGEPLRCTAASLQPTGLYLLHPPLILLLWV
GNQVPACTLAQLFSAACFSSLPSGEMKLPVLDTPLSVRVRSLIDELSGRTLHSRKMLVVK
QGDACEEVLQRHLVEDKSPNGGASYADFLYHLHFNSVRLLQ
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggatgtccccacaaaccacctaaaccagcctcccgctcagcagtggggggtgcagggc
ggctggccccctgctcagggacctgtttacaatcctctgcccagttttcatcgtctcagc
ctgggccccccgcagacgtggggcagcagcccccacagcaggggcgacccgagcggtcgg
gaccagctccgactcggccctgaagctcagctttctgccgcaaatccacctgacctccga
ggaggaaacgctcctccgtgtcgtcctcctcaccccccccagcaggtctgtccgtctgca
gcccccccctctatagtccaggctcctccgctccagactcctgagagcgcagcatcagga
ccagcagctgaaggagccaatccgaggccttcaggtggatttgactccgcctccgctcac
ctgcagcttcagtttccagcaggaaacacaaactttattcctccaggagctgaagaggac
agacatgcatcacagcagcaccccccctctgcctcccggtacggtctggatccggattcg
ctgcccagcgccgtgaaggtcatgctggaggacagagctgaatggtggggcaggaccttc
atctcagagcccttctctcctcttcctcctcttcccaccacttcctgtgtgacggaggac
cgaggtaatgccagtccctccgtgatccgctccacctgctactgtttaccctgtgaggct
caggcgggggcgctcagccggctgcctctgggggctctggtcacccccctggggaggccg
aacgctgcagaggcccctccccctctgtgcgaggactcggagcgcgttgacggctgcagc
tcctgcggcgcctccatgtgcccccccatgagctggcaggactgcgggcaaaggttttac
tgtcccttttgtgggaaactcaacgaggtggcgtggaaacactaccagcccaccacagga
gtgaacggcgtccgcgtggacgcagacctcagacctgagctgagtctgggctcgtatgag
gtcatcagccctcagaaggaggaaccagctgctctgctgttcgccgtcgatgtttctgct
tcagctcaaagaggaggacacttggagttcataactcaacaaatccaggcagttctgagc
tctatgagcagggaggctggctcctgcagcgttcccgtcggtttgatgtcgtacgacagc
aggatccacctgtacgacctcagcccgcagcggtcccgcccccacatgctggtcatcgcc
gacacggaggaggtgcagcttcctgtgagggaggggcttctagtgcccctcagagacgcc
atagagagcctctccagcgttctgcagctcctgcctcacgttggtgccgaccacgacggc
tccagtggagctccggtggagctgcccatccaggcgggcctcgccgtgcttcagggcctg
aagagtcccggaaagctgctgatcttccattctgcggatctgatggaggcgggaaactca
aacaactcctcctccggactcttcgggtccaacaaaccaaagtcagtctttcagccgtcg
gatcagtccgtctctctggccaaagagtgcgtcatccagggttgcggcgtgcacctgttt
gtcctctcgcagcaggatgtgggcggagcttggcccggccacatcccacacctgacggga
ggcgctctgaccagctatgaccacctgcagggcccgccggaccaggaccgtttcggccgg
gacctgaggaggacggtggagacggactgcggtttccgggccgagctccagatcttcgtc
tctaaagatctgcgtgtgtctgggtgttatgggatgttcgtccccgggcccagcccggca
cacgtcaccatggcgacgctggaccggagcaccactctggctgtggagctggcacacacc
agaaccctggaggaggccagaggggcggtcgtacagacggttctgtcctacaccctccgg
accggacagaggaggacccgggtccacacgctgacgctcagatgctcacgccaccttcag
gagaccttcaggaacttccaggcccaaacgctcctcagcttctactgcaaaaagatgtac
tgctcggtgctggagcgccccctgcaggagctgagggaggagctgcagacggacatgacg
gcggcgctggcgtcttaccgcaaacactgcagctcttcctgcgtgtcggcggggcagctg
gttcttcctcggttcctgcgagctctccccgtcttcatcaacagcctgaggaagagcgag
gttctgctgccgggtctgaggagctccatccaccagaggctgcagctgcgctgccgcgtg
ctcgccatggacccccgcagcaccgtccagcacttctacccccccctgctgccgctgctg
ccgtcagacggagactcctgcggttcgagtccgggcgagccgctgcgctgcacggctgcc
agcctgcagcccacgggcctgtacctgctccacccccccctcatcctgctgctctgggtg
ggaaaccaagtcccagcatgcactctggcccagctcttcagcgccgcctgcttctcgtcc
ctgccgtccggagagatgaagctgccggttctggacactcctctgtccgtccgtgttcga
tctctgatcgatgagctgagcggccggacgctgcacagccgaaagatgctggtggtgaag
cagggagacgcctgtgaggaggtgctgcagcgccacctggtggaggacaagagtccgaac
ggaggagcgtcgtacgccgacttcctgtaccatctgcacttcaactctgtccgactcctg
cagtga
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