KEGG   Oryzias melastigma (Indian medaka): 112136393
Entry
112136393         CDS       T07439                                 
Name
(RefSeq) TATA-box-binding protein isoform X1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112136393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:oml03000]
    112136393
   03021 Transcription machinery [BR:oml03021]
    112136393
Transcription factors [BR:oml03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    112136393
Transcription machinery [BR:oml03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     112136393
  RNA polymerase III system
    TFIIIB
     112136393
  RNA polymerase I system
    SL1/TIF-1B
     112136393
SSDB
Motif
Pfam: TBP
Other DBs
NCBI-GeneID: 112136393
NCBI-ProteinID: XP_024113840
LinkDB
Position
LG9:complement(444673..449436)
AA seq 301 aa
MSELHFDAFYPMDDEAVENFYLLFVENATPKGEEEEVEGQGKGHPEGQTVGQREGHPEVF
SPDRAAVKLNKGGCGPAHPPAPEGKLHPTEVGLDGGMSRLMPDGADDLPLLCIRNVVSIA
DLGSKLDLALISQTLWNTEHKATRALGLLMRIRRPRTTANIFRSGKMICTGATSMEECRQ
ATRRHARILQKAGFPVRILNFRIINCVCTVKTFPMDLEGLVRSDPDHFWFEPELCTSALY
RPAGSITVTIHRRGTIVLMGNAGRSSPPPPSSWSTCTSLPEHTTQHIQDSRPKLIFFGVF
L
NT seq 906 nt   +upstreamnt  +downstreamnt
atgagtgaactccactttgacgccttctatcccatggatgatgaggccgtggagaacttt
taccttctgtttgtggagaacgccactccaaagggggaggaggaagaggtggaaggtcag
ggtaaaggtcatcctgaaggtcagactgtaggtcagcgtgaaggtcatccagaggtcttc
agtccagacagagcagctgtgaaattaaacaaaggaggctgtggccccgcccacccccct
gctcctgaggggaagctgcatcccactgaggtcggccttgacggcgggatgtccagattg
atgccagatggcgccgacgacctgcccctcctctgtatcaggaacgttgtctcgatcgcc
gatctgggctccaaactggaccttgcactgatcagccaaaccctgtggaacactgagcac
aaagctacgagggccctaggcctgctgatgaggatccggagacccaggaccacggccaac
atctttcggtcgggcaagatgatctgtactggtgccaccagcatggaggagtgccgccaa
gcaaccaggaggcacgcccggatcctgcagaaggccggcttccccgtccgcatcctcaac
ttcagaatcatcaactgcgtctgcacggtcaagactttccccatggacctggaagggctg
gtccggagcgacccggatcacttctggtttgaaccggagttatgtacttcagctctctac
aggccggctggcagcatcaccgtgacgatccaccgccggggcaccatagtcctgatgggt
aacgctggacgctcgtctcctccacctccgtcttcctggtcaacctgcacctctttacct
gaacatacaacacaacatattcaagattctagaccaaaattgatcttttttggggttttt
ctttga

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