Oryzias melastigma (Indian medaka): 112136398
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Entry
112136398 CDS
T07439
Name
(RefSeq) RNA-binding protein with serine-rich domain 1-B isoform X2
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112136398
03015 mRNA surveillance pathway
112136398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112136398
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112136398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_7
RRM_5
RRM_occluded
RAP1
LPD16
Nup35_RRM_2
SET_assoc
DDHD
Menin
Motif
Other DBs
NCBI-GeneID:
112136398
NCBI-ProteinID:
XP_024113847
LinkDB
All DBs
Position
LG9:complement(430446..438915)
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AA seq
275 aa
AA seq
DB search
MALSPTKRKEDDKSKPRGKEKSGVTKEGGDKERGRNKTRTRRSASSRSSRSSSSSSSSSG
SSSGSSSGSSSSASSHSGSSSSRSSSSSSSSSSPSPSRQRHNNRRRSRSKSKSAKKDERE
RRRQSPTPKPTKVYLGRLTRNVIKEHIHEIFSTYGKIKMIDMPVNRAHPHLSKGYAYVEF
ENSEEAEKALKHMDGGQIDGQEITVTAVLTPVIRPLPRRLSPPRRMPPPPPMWRRTPPRM
RRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtccccgaccaagaggaaggaggacgacaagagcaagccgcgaggcaaggag
aagtcaggagtcacaaaagagggcggggacaaggagcgtgggcggaacaagacccggact
cggcgcagcgcctccagcaggagcagcaggtccagctccagctccagcagcagctcaggc
tccagctccggttcctccagcggctccagctcctccgcctccagccactcaggctcctcc
agctcccgctcctcttcttcctcctcctcatcctcctcgccgagccccagccgccagcgt
cataacaaccggcgccgctcccggtcaaagtccaaatcagccaagaaagatgagcgggaa
cgccggcggcaaagccccacccccaaacccaccaaggtgtacctgggccggctcaccagg
aatgtcatcaaggaacacatccatgagatcttctccacctacggaaagatcaagatgatc
gacatgcccgtgaaccgcgcccacccccacctatccaaaggttacgcctatgtggagttt
gagaactctgaggaggcggagaaggcgctgaagcacatggatggaggtcagatcgacggt
caggagatcaccgtcaccgccgtgctgacccctgtcatccgacccctgcctcgccggcta
tctccaccccgcaggatgcctcccccaccccccatgtggcggcgcaccccccctcggatg
agaagaagatcccggtctcctcgccgccgctctcctgtccgccggcggtcacgatctccg
ggacgccgacgccatcgctctcgctccagctccaactcctcccgttag
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