Oryzias melastigma (Indian medaka): 112136468
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Entry
112136468 CDS
T07439
Name
(RefSeq) coatomer subunit beta' isoform X3
KO
K17302
coatomer subunit beta'
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112136468
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112136468
Membrane trafficking [BR:
oml04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
112136468
Exosome [BR:
oml04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
112136468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_SCAP
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_IFT122_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
PH_SPO71
Beta-prop_DCAF12
HEAT_GCN1
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
112136468
NCBI-ProteinID:
XP_024113944
Ensembl:
ENSOMEG00000006897
LinkDB
All DBs
Position
LG13:24959059..24975407
Genome browser
AA seq
1139 aa
AA seq
DB search
MPLRLEIKRRLTARSERVKSVDLHSTEPWMLVSLYNGTVVVWNHETQLMVKTFEVCDLPV
RVARFVARKHWIVVGADDMLVRVFNYNTLEKVNMFEAHSDYIRCISVHPTQPYILTSSDD
MLIKLWDWERKWLCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSKTPNFT
LEGHEKGVNCVDYYSGGDKPYLISGADDHLVKIWDYQNKTCVQTLEGHAQNVTSVSFHPE
LPVILTGSEDGTVRVWHSNTYRLENSLNYGMDRVWCICGRPGSNYVAVGYDEGSIIIKLG
REEPAMSMDSSGKVMWARHSEVQQASLRTLGDTEVQDGERLPLGVKDMGSCEIYPQTIQH
SPNGRFVVVCGDGEFIIYTAMALRSKSFGSAEEFVWAHDSSQYATREGMNVVKIFKNFKL
KKTFKPSFGAEEIFGGFLLGVRSNNGLAFYDWENVQLIRRIEIQPKHVFWSESGELLCIA
TEESFFLLRFLPEQISAAQGANDKMTEDGIEDAFEVLGEVQEVVKTGLWVGDCFIYTTSL
NRLNYYVGGEIITIAHMDRIMYLLGYIPKDNRLYLGDKELNIVSYSLLLSVLDYQTAVMR
KDFSIADKVLPTIPKDQRTRVARFLEKQGYRAQALAVSTDPEHKFELALQLGDLTTARQL
ALEAESQQKWRQLAELATTKCQLSLAQECLHQARDYGGLLLLATTSGNVEMVGKLAEGAE
EDGRTNVAFLSYFIQGRLEKCLDLLIDTNRLPEAAFLARAYIPSQVSRVVRLWKESLSKV
NKKAADALADPAEYSNLFPEIQQALLAEQYLKETHVRVRASAEYPLVTPNEDRHVLEESN
GFRPEAEILKPAEMEAVERVADCPVAAVLTEVPHSEEAAQEELVPLERESTTTALVQSIP
SEGEDTRHGISSTAEDLLCLEECSSQEPVTMKGEPEEVQSSSVQDVIPSDESAACISRND
LNLTGKELACEAAAELEMSDLLVSADSGASEETSSYDDLDLEADTTSSPVSAVMEKSPHE
LVLEAELSHTTTEELISSQTGGSQEPPNEASPQSSAEDRLMLLEPVLSQEQDKQTTGESV
EPEDESEQELLLEPPPAESNVEEESEESAEDLEGEIADEDLDDLDMENLDLIDEDLLSE
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgcggttggagatcaagcgcagactgacggctcggtcagagcgtgtgaagagc
gttgacctgcattccacagagccatggatgctggtcagtctctacaacggcactgttgtg
gtctggaaccatgagacacagttgatggtgaaaacctttgaggtgtgtgatctgcccgtc
agagtggctaggtttgttgccaggaaacactggatcgttgtcggagcggatgacatgctg
gtcagagtcttcaactacaacaccctggaaaaggttaacatgtttgaggcgcactctgac
tacatccgctgcatctcggtccaccccacccagccctacatcctcaccagcagcgatgac
atgctgatcaagctgtgggactgggagaggaagtggctgtgcagtcaggtgttcgaggga
cacactcactacgtcatgcagattgtcattaatcccaaagacaacaaccagtttgccagc
gcctctctggacagaaccatcaaggtgtggcagttgggctccaagactcccaactttact
ctggagggtcatgagaagggagtgaactgtgtggactactacagcgggggggacaagccc
tatctcatatcgggggctgacgatcacctcgttaaaatctgggattatcagaataaaacc
tgtgttcagaccctggagggtcacgcccagaacgtcaccagcgtcagcttccatcccgag
ctgcccgtcatcctcacaggttctgaggacggcactgtccgagtttggcactccaacacc
taccgattagaaaacagtctcaactatggcatggacagggtgtggtgtatttgtgggaga
ccaggctccaactatgtggcagtgggctatgatgaaggcagcatcattatcaagctgggc
cgagaggagcccgccatgtccatggactccagcgggaaggtcatgtgggcgcggcactcc
gaggtgcagcaggccagcctgaggactctgggagacacagaggtgcaggacggagagagg
ctgccgctgggcgtcaaagacatgggcagctgtgagatttacccacaaaccatccaacac
agccccaacggaaggtttgttgttgtttgtggagacggggaattcatcatctacaccgcc
atggccttgaggagcaaaagtttcggctccgctgaggagtttgtctgggctcacgactcc
tcacaatatgccaccagggagggcatgaatgtggtgaaaatattcaagaacttcaaactg
aagaaaacatttaaacccagcttcggggcagaagagatttttggtggcttcttattggga
gtgaggtcaaacaacggcctggccttctacgactgggagaacgtccaactgatccgccgt
attgagatccagcccaaacatgtgttctggtcagagtctggggagctgctatgtatcgcc
actgaggagtctttctttttgctgcgcttcctgccagagcaaatctccgcagctcagggc
gccaacgacaagatgacagaggatgggatagaggatgcctttgaggtgttgggagaggtc
caggaggtggtgaagacgggcttatgggtgggagactgtttcatctacaccacctctctg
aaccgacttaactactatgttggaggagagattatcaccatagcccacatggacaggatc
atgtatctgctgggctacatcccaaaggacaaccgtctctacctcggagataaggagctg
aacattgtcagctactctctgcttctctctgtgttggactatcagacagctgtcatgagg
aaggatttcagcatcgctgacaaagttctgcccacaatccccaaagaccagagaaccaga
gtcgcccgcttcttagagaagcagggttacagagcgcaggcgctagccgtgtccaccgac
ccagaacacaagtttgagctggctctgcagctgggagacctcaccacagcacgccaacta
gccctggaggcggagtcgcagcagaaatggaggcagctggcagaactagctaccaccaag
tgccaactcagcctggctcaggagtgtctgcaccaagcgagggattatgggggattattg
ctgctggcaaccacctctggcaacgtggaaatggtgggcaaactggctgagggggcggag
gaggatgggagaaccaacgtggccttcctgtcgtacttcatacaggggagactggagaag
tgtctggaccttctgattgataccaatcgactgccagaggctgcattcctggcaagagca
tatatacccagccaagtctcaagggtggtgaggctgtggaaggaaagtctgtccaaggtt
aacaagaaggcggcggatgctttagctgaccctgcagagtacagcaacctgttccctgag
atccagcaagccctgctggctgagcagtacctgaaggagactcacgtcagggtcagagcg
tctgcagaatacccactcgtcacgccaaacgaggatcgtcatgtcctggaagaatctaac
ggttttaggcctgaagcagagattcttaagccagcggagatggaggcagtggagagagtg
gctgattgtcctgttgcagccgtgctgacagaagttcctcattcagaagaagcagcacag
gaagagttagttccactagagcgggaatccacaacaactgctctagtgcagagcatccct
tctgagggagaagatacaagacacggcatcagctctacagctgaggatctgctctgcctg
gaggaatgctcttcacaggagcctgtcaccatgaagggagagcccgaggaggtacagtcc
agctcagtccaagatgtcattccgtctgacgaatcagctgcctgcatctctcgaaatgac
ctcaacctgacaggaaaggaattagcgtgtgaagcagcagcagagcttgagatgagcgac
cttttggtgtcagcagattctggagcgagtgaagaaacgtccagttacgatgatctggat
ctggaagcagataccacctcctcaccagtctctgctgtgatggagaagagtccacatgaa
ctcgttttggaagcagaactgtcacacacaacaacagaggagctcatctcctcccaaacc
ggcggaagccaagagcctcccaacgaggcgtctccacagagctcagctgaagacagactg
atgctgctggagcctgtcctgtctcaggagcaagacaaacagaccacgggagaatctgta
gaaccagaagatgagtcagaacaggagcttcttctggaaccccctcctgcagaaagcaat
gtggaggaagagtctgaggaatccgctgaagatctggaaggagagattgctgatgaggat
cttgatgatctggatatggagaatttggacctgatagatgaagatctgctgagtgaatag
DBGET
integrated database retrieval system
