Oryzias melastigma (Indian medaka): 112136489
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Entry
112136489 CDS
T07439
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112136489 (prdm1a)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
112136489 (prdm1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
112136489
NCBI-ProteinID:
XP_024113969
Ensembl:
ENSOMEG00000017720
LinkDB
All DBs
Position
LG16:complement(22936839..22949809)
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AA seq
848 aa
AA seq
DB search
MCGWEQSYTATSHSSATLTSEGAHTMEQDDTHPKMASAATTSSTLSDGAETMTDTDVDVE
MEETDMSTWTDTEFEKKCTYIVQDTPWEATPDGDGAMTTTRAEVSLPRNLAFKHKAGSKE
VVGVCSREYIPQGTRFGPLVGEIYTADSVPKDANRKYFWRIYADGEFHHFVDGLDETRSN
WMRYVNPAHSAAEQNLAACQNGMEIYFYTVKPVPAGAELLVWYCHEFARRLRYPSSGELM
MQKLKESLLEGKHHEVSSEDHLDEASSPSPVTVTPKPPKREHSVLSILRGTNSTSSGSNK
RETSRPIVTRPLCADSPERPLYPRALYPAIRPHPHVAEDFLSHKPNLGYPSTHSPGNQSS
ATPSPSARSSPDSTPQGSPCGPAPSPASFYPTGLGSYPGYSPPSAPLPTHFYSPASPYPR
YLLPHHYPLSGGGVPTVGGMIPRVYPLCNNLLPPHVPLLPSDTGRHFLIPEPMHPSSFSS
HRDFFLPGSASAFTIKTPLIDRAGPHNPYSGLLNPHGPARTPSSGSPTAGTAPPSEQVPT
KPTSALLGNTSEHRTDEEAINLTKVKRGAGSAGYKALPYPLKKQNGKIKYECNVCSKTFG
QLSNLKVHLRVHSGERPFKCQTCSKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSN
LKTHLRLHSGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCPHCHRHYIHLCSLRLH
LKGYCLAASSGSRSPTVSSQAALEEMHRANEEIERFDVSEHAERLDQLPGGAEIDTMLEK
QVLGMPWRDAEVKSLHFHPHHKGGSTELLSYGSYESAKETSVIKMRRSSPDPSLPVNVTV
KQESDDHA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggagcaaagttacacggcgacctctcatagctcggccacattgaccagt
gagggggcgcacaccatggagcaggacgacacgcaccccaaaatggcctccgccgccacc
accagcagcacgctgtccgacggagccgagaccatgaccgacacggacgtggacgtggag
atggaggagacggacatgagcacgtggaccgacacggagtttgagaagaagtgcacgtac
atcgtccaagacacgccgtgggaggcgaccccagacggcgacggggcgatgaccacgaca
agagcggaagtgtcgctgccgcgaaatctcgccttcaaacacaaggcgggcagcaaggag
gtggtcggcgtgtgcagcagagaatacatcccccaaggaacacgcttcggccctctggtg
ggcgagatctacacggccgacagcgtacccaaagacgccaaccgcaaatacttctggagg
atctatgctgacggcgagtttcaccactttgtggacggcctggacgagacccggtccaac
tggatgcgctacgtgaacccggctcactccgccgcggagcagaacctggcggcgtgtcag
aacggcatggagatttacttctacacggtgaagcccgtccccgccggtgccgagctgctg
gtgtggtactgccacgagtttgcccgtcgcctgcggtacccgtcctcgggggagctgatg
atgcagaagctcaaggagtcccttttggagggcaagcaccatgaggtgagcagcgaggac
cacttagacgaagcatccagcccgtctcctgtcacggttaccccgaagccaccaaagagg
gagcacagcgttctttctatcttgcgtggcaccaacagcacgtcatctgggtccaacaag
agggaaaccagtcgaccgattgtcacccgccctctttgtgctgacagcccagagcgcccc
ctttacccccgcgccctttacccagctatcaggccccacccacatgtagcagaagacttt
ctcagtcacaaacccaaccttggctacccttcaactcactccccaggaaaccagtcttca
gctacacccagtccgtctgcaaggagcagtccagacagcaccccacaggggagcccctgt
ggtcctgccccgtccccggcttcattttaccccaccggactcggttcctaccctggttac
tcaccgccatctgctcccctccccacacatttttattctccagcaagcccctacccaagg
tatctcctaccacaccactaccctctttcaggtggtggtgtcccaacagttggagggatg
attcctagagtttaccccctctgcaacaacctcttgccccctcatgtgcccctcttaccc
tccgacacagggagacacttcttaataccggagcctatgcacccctcgtccttttcttcc
catagagacttcttcctacccgggtccgccagtgccttcaccatcaaaactcccctcata
gacagagcagggcctcacaacccttactccggactccttaacccacacggaccggcccgc
accccctcaagtggctctccaactgcgggcactgcaccccccagcgagcaggtgcccaca
aagcctacctcagccctcctgggcaacaccagcgaacaccgtactgatgaagaggccatt
aacctgacgaaggtgaagcggggagcaggctcggcaggctacaaggcgctgccttaccct
ctgaagaagcagaacggcaaaatcaaatacgagtgcaacgtgtgcagcaagaccttcggg
caactgtcaaacctgaaggttcatctacgtgtgcacagtggagaaagaccatttaaatgt
cagacctgcagcaaaggcttcactcagcttgctcacctgcaaaaacactacctggtccac
acaggggagaagccacatgaatgtcaggtttgtcacaagcgcttcagcagcaccagcaac
ctgaaaactcacctgcgtctccactcaggggaaaagccttaccactgcaagctatgcccg
gcaaagttcacccagttcgtccacctcaagctccacaagcgcctgcactcccgtgagcgt
ccccacaaatgcccccactgccatcggcactacatccacctgtgcagcctgcgacttcac
ctgaagggttattgcctggcggcgagctcgggctctcgcagtcccactgtctccagccag
gccgctttggaggaaatgcaccgcgccaacgaggagatcgagcgcttcgacgtcagcgag
cacgccgagcgacttgaccagctgccaggtggggcggagatagacaccatgctggagaag
caggtgctggggatgccgtggagggacgcggaagtgaagtccctccacttccacccccat
cacaaaggcggctccaccgagcttttgtcttacggctcgtatgagtccgcgaaagagacg
tccgtcatcaagatgcggcgcagcagccccgacccttcacttcctgttaatgtcactgtc
aagcaggagtcagacgatcacgcctaa
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