Oryzias melastigma (Indian medaka): 112136584
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Entry
112136584 CDS
T07439
Name
(RefSeq) DENN domain-containing protein 4B
KO
K20163
DENN domain-containing protein 4
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112136584
Membrane trafficking [BR:
oml04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
112136584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
PPR
DUF2464
Motif
Other DBs
NCBI-GeneID:
112136584
NCBI-ProteinID:
XP_036071682
Ensembl:
ENSOMEG00000004382
LinkDB
All DBs
Position
LG16:28192335..28219554
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AA seq
1639 aa
AA seq
DB search
MFGWKLFRNESDQNRCFIGSQRCLLFITTWVRAALTRTRGSLVCIPAVLLTPTWRRCRCR
AVREAPCRNRVREHLDRPGLIRFSTQRFWFCSGSVGSEELQQIFWGAPASSLRFPEKEGN
NADAADLLTENIRGMTEEKCPQLVDYFVVAGLDPKGAWRPLDEDGRSSSSSSPSSSPARA
SEPVTDLVVISRGLGEEVPEGFTCIEKTLGGHSAELSAGLLNNPHLYLCYRRGRDKPPIV
DLGVLYEGKDLLKTSWYVIETTPYSRSASLSSGGAPTAHRVFLMYRRATDSQGLHTLGVT
DIALLLPSRGEVAPHTFCRVNKNLNTGMWGPALFLCYKRAVAKANALLFEAGLISRYPQE
DQDAFPLPESVPVFCLPMGVSVESWPLNTKYQLPIFSTFVLTSACGDKVYGAALQFYESF
SRELLSERQSVRLGLLSVVDRRPISSRSLHVKKSICVLSHWPFFTVFQKFLTFIYRYSIS
GPHVLPLEKHISSFMHNVPFPSPQRPRILVQLSPYDNLLLCQPVSSPLPLSGASFLKLLQ
NLGPENTCTLLLAVLTEHKLLLHSLRPDVLTSVSEALVSMTFPLRWPCPYIPLCPLQMAD
VLLAPMPFMVGVHSSYFDLYDPPAEVVCVDLDTNTIFQSEDKKLLSWRSLPRKPGKTLFN
TLSGLHRTLEKICSPGLEEATLEFLLTDYDQIYRRQKQLELEIQEAFLRFMSCLLRGYRA
FLLPITQAPSDTATDCSSLFNLQGFLKSRDRTQQKFYSQLTRTQMFTQFIQECSFVSDRH
ACLEFFDECVQKVDVEKPEEVRLIDLEETHSGEHTVFIMPPEEPQEADGSECPALYSYDT
FPILNPELLEHPQDQLRVPAKGSAPSSPAPRRTKQEIKLAQKRAQKYSAVPEMWSKCLLG
HCYGLWFIYLPTFVRAETAKVRALHTAYEVLKHMENRKVVLPDEVCYRILMQLCGQYGQP
VLAVRVLLEMKKAGITPNTITYGYYNKAILESKWPSTSQGGRLRWAKLRNVLLAVAHFRR
PIKARQKSGSVGSRGRPTCADSAVAEDLKPRPHSALIRQSSWSGLSESSSHESLSGPLVK
SSSLSSMRPPADKSRPSRRSAPHHAGTNGCAASQKPPSGLRDSSTPPPAPPGGDVVPRSQ
VCLSSFYRDCAETDCSSCEPEHGDGRSVRPPLSEGAARRTAVDENCNHVSSPSRGLAGKL
QQLLTPTKKGAGRRATSVDDRRPGGGRGIGRRVSDQRQSRKAQVAETLLKAKERLVNATS
ESSLSVGSDLDLLDTPTPAFPLRRSWDSNQDGTGMEVLMSSCSPCRSCNSLVYDEEIMAG
WTSDDSNLNSSCPFCSASFVPLLNAEICDLGPVSSTERCNLNLEDEVESAVRPPSAAEPP
QQCNGLSEDSSSETSIYSETSRTTTSLSMGGTPQVTVAYLSPLVLRKELESLLENEGEAV
LAQPQFLENHSIIFWNLVWYFQRLGLPCNLLQLVRSSPLVSAFSQSESAAVRIRLLWDTL
TPDTDQWPPLYILWRIHSGAPMRVYSWRRHNHPFSLSFLEEMLRYVGMNEVHKAVALFLE
TLAKQGSARIQRSLYRELLFLTLAAMGKDHVAAFDKKYKAACSRLAGSMSQDELRRKRAL
PPSTKAVDCRRSFHPPLEC
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggtggaagttgttcagaaatgaatcggatcagaaccgctgcttcatcggatca
cagcgctgtctcctcttcatcactacctgggttcgggccgccctcaccagaaccagaggc
tctttagtctgcattcctgctgttctgcttacgcccacatggaggcgctgcaggtgtcga
gccgtccgtgaagctccctgcaggaaccgggtcagagagcatttggaccggcctggtctg
atccgattttctactcagaggttttggttctgttctggttctgtgggttcagaggagctt
cagcagatcttctggggagcgccggcgtcctcgctccggtttccagagaaggaaggaaat
aatgctgatgcggcggatctgctgacagaaaacatcagaggcatgaccgaggagaaatgc
ccccagctggtggactacttcgtggtggcgggactcgaccccaagggggcctggagaccc
ctggacgaggacgggcggagctcgtcctcttcctcgccgtcgtcctcgccggcgcgggcc
tcggagccggtgacggacctggtggtgatctctcggggtttgggcgaggaggtgcccgag
ggcttcacctgcatcgagaagacgctgggggggcactcggccgagctgagcgccggcctc
ctgaacaacccccacctgtacctgtgctatcggcgggggcgggacaagccgcccatcgtg
gacctgggggttctgtacgaggggaaggacctgctgaagaccagttggtacgtcattgag
accacgccctacagccgctcggccagcctgagctcgggtggcgcccccacggctcaccgt
gtcttcctgatgtaccgacgggccacggactcccagggtctgcacactctgggcgtcacc
gacatcgcgctgctgctgcccagcagaggagaggtggcgccgcacaccttttgccgggtc
aacaagaacctgaacacgggcatgtggggacccgctctgttcctgtgctacaagagagca
gtggccaaagccaacgcgttgctgtttgaggccggtctgatcagccggtacccgcaggag
gaccaggacgccttcccgctgcccgagtccgtgcccgtcttctgtctgcccatgggggtg
tctgtggagagctggccgctcaacaccaagtaccagctgcccatcttctccaccttcgta
ctgacctccgcctgcggggacaaggtctacggtgccgcgctccagttctacgagtccttc
tccagagagctgctgtcggagcggcagagcgtccggctcggtctgctcagcgtggtggac
cgccggccaatcagcagccgcagcctccacgtaaagaagagcatctgcgtcctctcccac
tggcccttcttcaccgtcttccagaagttcctcaccttcatctacagatactccatctct
ggaccgcacgtcctcccactcgaaaaacacatctccagcttcatgcacaatgtcccgttt
ccctccccccagcggcctcggatcctagttcagctctccccgtacgacaacctgctgctg
tgccagccggtgtcctcccccctccctctcagtggtgccagtttcctgaagctgctgcag
aacctcggtccagagaacacctgtacgctgcttctggccgtcctcaccgaacacaagctg
ctgctgcactcgctgagacccgacgtcctcacctccgtcagcgaggcgctcgtgtccatg
accttcccgctgcgctggccgtgtccctacatccctctgtgcccgctgcagatggccgac
gttctgctggcgcccatgcccttcatggtgggcgtccactccagctactttgacctgtat
gaccccccagcagaggtggtgtgcgtggacctggacaccaacaccatttttcagtcagaa
gacaagaagctgttgtcatggcgatcgttacccaggaaacctgggaagactctcttcaac
acgctgagcggcctccacaggaccctggagaagatttgcagccccggcctggaggaggcg
acgctcgagttcctgctgaccgactacgaccagatctaccggcggcagaagcagctggag
ctggagatccaggaggccttcctgcgcttcatgagctgcctgctgcgaggataccgcgcc
ttcctgctgcccatcacgcaggcgccgtctgacaccgccaccgactgcagctccctgttc
aacctgcagggcttcctgaagtctcgcgatcggacgcagcagaagttctacagccagctg
acccggactcagatgttcacgcagttcatccaggagtgctccttcgtcagcgaccgccac
gcctgcctggagttctttgatgagtgcgtgcagaaggtggacgtggagaagccggaggag
gtgaggctgatcgacctggaggagacgcacagcggggagcacaccgtcttcatcatgccc
cccgaggagccccaggaggctgacggctcggaatgccccgccctctacagctatgacacc
ttccccatcctgaacccggagctcctggagcacccgcaggaccagctgcgcgtcccggcc
aaaggcagcgcccccagcagccccgccccccgacgcaccaaacaggagatcaaactggcc
cagaagcgagcccagaagtactcggcggttccggagatgtggtccaagtgtctcctgggt
cactgctacggcctgtggttcatctacctgcccaccttcgtccgcgccgagaccgccaaa
gtccgcgcgctgcacacggcgtacgaggtgctcaagcacatggagaaccgcaaggtggtt
ctgccggacgaggtgtgctacaggatcctgatgcagctgtgcggtcagtacggccagccg
gtcctcgccgtgcgggttctgctggagatgaagaaggctggaatcacccccaacaccatc
acctacggatactacaacaaggccatcctggagagcaagtggccctccaccagtcagggg
gggcggctccgctgggccaaactgcgtaacgtcctgctggccgtggcccacttcagacgg
ccaatcaaagcgcggcagaagagcggctctgtgggctccagaggacgtcccacctgtgca
gactcggccgtcgctgaggacctgaagccccgcccacactcggctctgattcgtcagtcc
agctggagcggtctgagcgagagctccagccacgagtctctgagcggtccgctggtgaag
agcagcagcctgagcagcatgaggccgcccgccgacaagtccaggccctccaggaggagc
gctcctcaccacgccggcaccaacggctgcgccgcctcccagaaacctccttcggggctg
cgggacagctccaccccgcctccagcgcccccggggggggatgtggtcccccgcagtcag
gtctgcctctcctccttctacagagactgcgcagagaccgactgcagctcctgcgagcca
gagcacggagatggcaggtcggtgcgcccacccctttctgagggcgccgccaggaggacg
gcggtggacgagaactgcaaccacgtgtcctcgcccagccgggggctggcaggaaagctg
cagcagctcctcacccccaccaagaaaggggcggggcgacgagccaccagcgtggacgac
cgccgccctggaggggggcggggcatcgggcgaagggtgtcggaccagaggcagtccagg
aaggctcaggtggccgagacgctgctgaaggccaaagagaggctggtcaacgccacgtct
gagagctcgctgtctgtaggaagtgacctggacctgctggacacgcccactccagcgttc
cctttgcgtaggtcctgggactccaaccaggacgggacgggcatggaggttctgatgtcc
agctgctcgccgtgccgcagctgcaactctctggtctacgacgaggagatcatggcggga
tggacgtccgacgactccaacctcaactcttcctgccccttctgctccgcctccttcgtg
ccgctcctgaacgccgagatctgcgacctcggacccgtcagcagcactgagcgctgcaac
ctgaacctggaggacgaggtggagagcgccgtcaggccccccagcgccgccgagcccccc
cagcagtgcaacggtctgagcgaggactccagctctgagaccagcatctactctgagacc
agccggaccaccacgagcctgtcgatgggcgggaccccccaggtcacggtggcctacctg
agccccctggttctgaggaaggagctggagagcctcctggagaacgagggcgaggcggtc
ctggcacagccccagttcctggagaaccactccatcatcttctggaacctggtctggtac
ttccagaggctcggcctgccctgcaacctgctgcagctggtcaggagctcgccgctggtc
agcgccttcagccagtcggagagtgctgcggtgaggatccgcctcctgtgggacaccctg
acgccagacactgaccagtggccccccctctacatcctgtggaggatccacagcggcgcc
cccatgagagtgtacagctggaggaggcacaaccaccccttcagcctgtccttcctggag
gagatgctgcgctacgtgggcatgaacgaggtgcacaaggccgtcgcgctcttcctggag
acgctcgccaagcagggctccgcccggatccagaggagtctgtacagggagctgctcttc
ctcactttggctgccatgggcaaagaccacgtagcggccttcgataagaagtacaaggcg
gcgtgctcgcggctcgccggctccatgagtcaggacgagctccggaggaagcgggctctg
ccccccagcaccaaagccgtcgactgccggcgcagcttccacccccccctggagtgctga
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