Oryzias melastigma (Indian medaka): 112136618
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Entry
112136618 CDS
T07439
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112136618 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112136618 (smarcc1a)
03036 Chromosome and associated proteins [BR:
oml03036
]
112136618 (smarcc1a)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112136618 (smarcc1a)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112136618 (smarcc1a)
PBAF complex
112136618 (smarcc1a)
GBAF(ncBAF) complex
112136618 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
112136618
NCBI-ProteinID:
XP_024114209
Ensembl:
ENSOMEG00000000487
LinkDB
All DBs
Position
LG16:complement(24197426..24217671)
Genome browser
AA seq
1154 aa
AA seq
DB search
MREHVCGCAISFKNLHGEVRCGRERQRAKHTMAMAATTAGTGSGGPASGPVGSGTAVGRK
KDGGPSTKFWESSETVSQLETVRLWIGKHYKKYVQNDSPSSKSLAGLVVQLLQFQEDAFG
RRVNNPALTKLPAKCFMDFKAGGALCHVLGSVYKFKSEQGWRRFDLQNPSRMDRNVEMFL
NVEKNLVQNNCLTRPIVFLSPDIEPKQASKLKDIIKRHQGSITEDKSKATHHIYPSPAQQ
EEEEWLRPVIRKDKQVLVHWGLYPDSYDTWVSSSEVDADVEDAPNADKPWKVHAKWVLDT
DAFNEWMNEEDYEVDENKKPVNSRQKIFPKEEESSRTPDRKERKANSAGKKRRRSPSPPS
TPAESRKKGGKKGNPGSHWKRRGHRGEEEDMEEDMTKDLDESSAGASMEEGSMSKNDDME
DDSVMSGGKDDEEQNKGEVNRMNDANEDNVTEQTHHIIIPSYGAWFDYNSIHEIERRALP
EFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQW
GLVNYQVDSESRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPTIPPQQPMPNFVDKSKEK
PIDLQNFGLRSDLYSKKNTKAKAGSTTRDWTEQETLLLLEALEMFKDDWNKVSEHVGSRT
QDECILHFLRLPIEDPYLESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASA
AAKAALEEFSRVREEVPAELVEAHVKKVQEAARSTGKVDPTFGLESSGIAGTAPEEPEKT
ETPEPEKMETDTESQQADKAEMKDEAEKPSESAEKSEKTEATEKVKKEGVEPSEPEEEKE
EDGEAKASPAADKDKEETTETSSSEQEKEKEEKETTEEGEEKRKKLEHDIGEGNIATAAA
AALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQ
RQQLLTERQAFHMEQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGQAPGPGHHHGPQGPG
PHSGPPPPGMHPGGPPPHHGGPPPHHGAPPPHHGGPPAGAAMHPGYPPMAHHPMAPHHPG
QTGPMGPGQPMPGRMMSGPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPEALPPAP
VGPPAPQSGRVADN
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcgggaacatgtttgcggctgcgcaatatcattcaaaaacttgcacggtgaggtacgc
tgtgggagagaaagacaacgagctaaacatacaatggcgatggcggcgacaacggcagga
acaggctcgggcggacccgcatctggccctgtcggcagcggaaccgcagtgggaagaaag
aaagacggcgggccctcgacgaaattttgggagagctcagaaactgtgtcccagctggaa
acggttcggctctggattggaaagcactacaagaagtatgtccagaacgactccccatcc
agtaaatccttggccggtttggtggtccagttactgcagtttcaggaggacgcatttgga
cgccgggtcaacaatcctgctcttactaagttgcctgcaaaatgttttatggattttaag
gcaggaggggctctctgtcacgtcctgggatccgtttacaagtttaaaagcgagcaggga
tggcggcgttttgacctgcagaatccatctcgaatggacaggaatgtggaaatgttccta
aatgtggagaagaacctcgtacagaataactgtttgactcggcccatcgtctttttgtca
cctgacattgaaccaaaacaagccagtaaactcaaagatatcatcaaaagacaccagggc
tccatcactgaggataagtccaaggctactcaccacatttacccttctccagctcaacaa
gaagaagaggagtggctacgcccggtcattaggaaagacaaacaagttcttgttcattgg
ggcctttatccagacagctatgacacctgggtgtcatccagtgaggtggatgctgatgtg
gaggacgcacctaatgctgacaaaccctggaaggttcatgccaagtgggttttagacaca
gatgcctttaatgagtggatgaacgaggaagactacgaagtggacgagaacaaaaagccc
gtcaactcccggcagaagatcttccccaaggaggaagagtcttcccgtacacctgatcgc
aaggagcgcaaggccaactccgccggcaagaagaggaggcgctcgccctcacctcccagc
actcccgcagagtcccgcaagaagggaggaaagaaggggaatccgggctctcactggaag
cgacgaggccacagaggagaagaggaagacatggaggaggacatgacgaaggacttggac
gagtcgtcagccggtgccagcatggaggagggcagtatgtccaagaatgatgacatggag
gatgactctgtgatgtctggaggaaaggatgacgaggaacaaaacaaaggagaagtgaac
cggatgaatgatgctaacgaggataatgtgactgagcagacacatcacatcatcattccc
agctatggagcttggtttgattacaacagcatccatgagattgaacgaagagccctgcca
gagtttttcaatgggaaaaacaaatccaaaaccccagaaatatatttggcgtaccggaac
ttcatgattgacacatatcggctgaaccctcaggagtacctcacctccacctcctgccgc
aggaacctgacaggagacgtctgtgccatcatgagggttcatgccttcctggagcagtgg
ggtttagtcaactaccaggtagattctgaaagccgcccgctccccatgggccccccaccc
actcctcacttcactgtcctggctgacactccctctggcctcatgccgcttaaccacaga
cctccaacgattcctcctcagcagccgatgcctaattttgtggataaaagcaaagagaaa
cccatcgacctgcagaactttggcctccgttctgacctctacagcaagaaaaacactaag
gctaaagcaggcagcaccaccagagactggaccgagcaggagactcttctactcttggag
gccctggagatgttcaaagatgactggaacaaagtttctgagcatgtcggctcacgcacc
caagacgagtgcattctccactttctgcggctgcctatcgaagatccctacctggagagc
acagaggcgtccctgggtccgctggcgtatcagcccatacccttcagccagtctggaaac
cctgtgatgagcaccgtggcgttcctggcctccgtggttgatcccagagttgcctctgct
gccgccaaggcagcgttggaggagttttctcgcgttcgtgaagaggttccagcagagttg
gtggaagctcatgtgaagaaggtgcaggaggcagcgaggagtacagggaaggtggacccc
acctttggtctggagagcagcgggatcgctggaactgctccagaggagccagaaaagacc
gaaactccagagccagaaaagatggagacggacacagaatctcaacaggccgataaggct
gagatgaaagatgaggcagagaaaccgagtgagtctgcagagaagagtgaaaaaacagaa
gcaacagagaaggtgaagaaagaaggagtggagccatcggagcctgaggaggagaaagaa
gaagatggagaagctaaagcgtctccagcagcggacaaagataaagaggagacaacggag
acgtcttcatccgagcaggagaaggaaaaggaagagaaggaaaccacagaggagggagaa
gagaagaggaagaagctggagcatgacatcggggagggaaacatcgctacagctgctgct
gctgcactggcatctgctgccaccaaggccaagcatctggcagcagtcgaggaaagaaag
atcaagtctctggtggctctgctggtggagacccagatgaagaagctggagatcaagctg
aggcactttgaggagctggagaccatcatggaccgcgagaaagaagctttggagcttcag
cggcagcagctcctcacagagcgacaggcgttccacatggagcagctcaagtacgcagag
atgaaggcacggcagcagatggagcagcaagctgccgctgcagctgccgccgccgctcag
gctcaagggcagggacaggcccctggccccggacatcaccacggaccccagggtcccgga
ccccattctgggccccctccaccaggcatgcaccccggaggacccccacctcaccacgga
gggcctcctccccatcatggagcacctccaccccatcacggaggacctcctgctggtgca
gcaatgcatcctgggtacccacccatggcccaccaccccatggccccccaccaccctgga
cagacaggaccgatgggaccgggtcagccgatgcccggacgcatgatgtccggcccaccc
tctgccggcccccctcccggtggaatgcctcccatgatgcctccccgtcacccaggagcc
cccaacggcatgtaccctggccccccacctgcgcagcctgaggccttgcctccagccccc
gtgggacccccggcccctcagagtggacgagtggccgacaactga
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integrated database retrieval system
