Oryzias melastigma (Indian medaka): 112136619
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Entry
112136619 CDS
T07439
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112136619 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112136619 (dhx16)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112136619 (dhx16)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112136619 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
112136619 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
Cas3-like_C_2
nSTAND3
SRP54
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
112136619
NCBI-ProteinID:
XP_024114211
Ensembl:
ENSOMEG00000019560
UniProt:
A0A3B3CJU0
LinkDB
All DBs
Position
LG16:24364995..24384139
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AA seq
1053 aa
AA seq
DB search
MAGLEQWVNDRLHDILGLSDRYVSQFMIGIARKSSSPEDFVSRLEQTGTIDIDQSVASFA
KELFDKIPRKQVAEKPARAIERQALEMQRKNQTYTLLEDSDSGEDAAREEQKGKKNSKNK
DRGGKRKHIRQKKYIESSSEDEAPKRGKSSPDDQKSVKKEEEEEEWEKEERERLQDIEER
DAFAERVRQKDKDKTRNITERTDKKAYEEAQKRLKMAEDDQKNMLPELRKKSRQSYLKKR
EEEKLEDLEAEIKDEEYFFSLDELTERERRDLEHKRILRDLAKDYKKAGAKEQEERKNRY
YMPEEKRRKDVPERDLELEETPMELGGEQGRWEEERLKTASLSFGAKKEREQGMRAEQEK
YQLILEEEEMIDFVTTAITMKGTRSEKDQEAQALSQAELKKQSMQEVRRSLPIFPYREDL
LAAINEHQVLVIEGETGSGKTTQIPQYLMEEGYTQGGMKIGCTQPRRVAAMSVAARVAEE
ISVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVILIDEAHERTLH
TDILFGLIKDIARFRPDLKVLVASATLDTERFSSFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLDACVVSVLQIHVTQPPGDILVFLTGQEEIEACCELLQERCRRLGSKIAELLILPIY
ANLPSDMQAKIFTPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQW
VESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMERIEVEVVSCQGENVPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYTHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIESAWL
LEVAPHYYKSKELEDSSNKKMPRKQGKAKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctggagcagtgggtcaacgaccgcctccatgacatcctggggttgagtgat
aggtacgtctctcagttcatgatcggcatcgcccggaagtcttccagcccggaggacttt
gtgagtcgcctggagcagacgggaaccattgatattgaccagagtgtggccagttttgcc
aaagagctttttgacaagattcctcgtaagcaggttgctgagaaaccagcccgcgcaatc
gaacgacaagccctggaaatgcagaggaagaaccagacgtacacgctgctggaggacagc
gacagcggcgaggatgctgcaagggaggagcaaaaggggaagaaaaacagtaaaaacaag
gacagaggaggcaagaggaagcacatcaggcaaaaaaaatacatcgagtcatcgagtgag
gatgaagctcctaaaaggggcaagtccagcccagacgaccaaaagtctgtcaagaaagaa
gaggaggaggaagagtgggagaaggaggagcgcgaacgactgcaagatatcgaggagaga
gatgcctttgctgagcgagtcagacagaaggacaaagacaaaacccgcaacatcactgag
aggacggacaagaaggcttatgaagaagctcagaagaggctgaagatggctgaagatgac
cagaagaacatgttaccagagttgaggaaaaagtctcgtcagtcgtatttaaagaagaga
gaagaagagaagctggaggacctggaggcggagatcaaagacgaggagtactttttttct
ttggatgagctcactgagagggagagaagggatctggagcacaagcgcatcctcagagac
ctggctaaagactacaagaaggctggagccaaggagcaagaggagaggaagaacagatac
tacatgccagaggagaagagaaggaaggatgttcctgagcgagacctggagctggaggaa
accccgatggagctgggaggggagcagggccgctgggaggaggagaggctgaagacggcc
tcgctcagctttggagccaagaaggagcgagagcaggggatgagggcggagcaggagaag
taccagctgatcctggaggaggaggagatgatcgactttgtcaccacagccatcaccatg
aaggggacccgcagtgaaaaagatcaggaagcccaggctctgtcccaggcggagctgaag
aagcagtccatgcaggaggtgcgccgcagcctgcccatcttcccctacagagaagacctg
ctggccgccatcaacgagcaccaggtgctggtcatcgagggcgagaccggttcaggaaag
accacccagatcccccagtacctgatggaggagggctacacacagggaggcatgaagatc
gggtgcacgcagcctcgcagggtggctgccatgtctgtggcggccagagtggccgaggaa
ataagcgtgaagctcggtaacgaggtgggctacagcatccgtttcgaggactgcacgtca
gagaggaccgtgctcaaatacatgacggatggcatgctgctccgggagtttctcaccgag
ccggacctggccagttacagcgtgatcctcatagatgaagcccacgagcgaacactgcac
acagacatcctgtttggccttattaaagacattgccagattcagacccgacctgaaggtt
ctggtggcgagcgccactctggacacggaacgcttttccagcttcttcgatgacgccccg
gttttcaggattcccggcaggaggttccctgtggatattttctacaccaaggctcctgag
gcagactacctggacgcgtgtgtggtgtcggtgctgcagatccacgtcactcagcctcct
ggagacatcctggtcttccttacaggacaggaggagatcgaagcgtgctgcgagcttctg
caagagagatgcagacggcttggatcaaagatcgcagaactgcttatcctccccatttac
gccaacctgccgtctgacatgcaggccaagatcttcaccccgactccccctggagccaga
aaggtggtggtggccaccaatattgcagagacgtccctcaccatagacggcatcatctac
gtcattgacccaggcttctgcaagcagaagagctacaacgcccgcacaggcatggagtcg
ctcatcgtgacgccctgctcacgggcttctgccaaccagagagcgggtcgtgccggcaga
gtggctgctgggaaatgtttccggctgtataccgcctgggccttcaaacacgagatggag
gaaacaaccgtgcctgagattcagaggaccaatctgggaaatgtagtcctgctgctgaag
agtctggggatcaatgacttgattcactttgacttcatggacccacctcctcacgagact
ctggttttggcgttggagcagctgtacgctctgggagccctaaatcacctgggggagctc
acaaagctgggcagaaggatggccgagttaccagtagatccaatgctgagcaagatgatc
ctggcctctgaacagtacaagtgttcagaggaagtgctgaccatagcagctatgctctct
gtcaacaactccattttctatcggcccaaagacaaagtggtgcacgccgacaacgccagg
atgaactttgtggttcccggaggagatcacctggtgctcctcaacgtctacacgcagtgg
gtcgagagtggatactccactcagtggtgctacgagaacttcatccagttccgctccatg
aggagagcccgggatgtcagggaccagctggaggggctgatggagcgcattgaggtggag
gtagtcagctgtcagggagaaaatgtgccgattcgaaaggcagtgacagccggatacttc
taccacacagcccggcttagcaaaggcggctacaagacggtgaagcaccagcagacggtc
tacacccaccccaacagctctctgtttgaggagcagccccgctggctcatctaccacgag
ctggtcttcaccaccaaggagttcatgagacaggtgatcgagattgagagcgcctggctg
ctggaggtggctcctcactactacaagagcaaggagttggaggacagcagcaacaagaag
atgccccgcaagcagggcaaagccaaggaggagctgggttga
DBGET
integrated database retrieval system
