Oryzias melastigma (Indian medaka): 112136769
Help
Entry
112136769 CDS
T07439
Name
(RefSeq) LOW QUALITY PROTEIN: NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112136769
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
112136769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
NACHT
Beta-prop_EML
AAA_16
NPHP3_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
DUF4062
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_Nup120_160
Beta-prop_SCAP
Beta-prop_IFT140_1st
AAA_22
Beta-prop_IFT122_1st
Y_phosphatase
Bac_DnaA
ATPase_2
AAA_35
Viral_helicase1
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
112136769
NCBI-ProteinID:
XP_036067627
LinkDB
All DBs
Position
LG4:4619383..4636711
Genome browser
AA seq
1727 aa
AA seq
DB search
MEDQPAAEDIRLGGAPTGQADRAQKMNSNMIRVFLSSGITDMSSERKALLEKAFPEVLLF
CRGLGLVFEVVDLHWGIRNDPFGDHKACEISLQEIQMCKRLSAGPNFIALLGNRYGHRAL
PRLIPEKQFEVYLSKLSNTPGGIKQLQQWFRKDTNALPPTYVLQPITAYFPYYCDLRPES
EQQHNRDVDSWRLTETQLLQLLRSAASEAEAAGEIPAELKRSFYTSVTEQELEQGLWIGG
NPANALLFLREQKVKERPKRLAKFMDATANGLLDPEAQKLLTELKSQLSATSQNSLNLHC
VELSRGTIDPKRKEHAQYLDILCQQFVSQMKARIEVAVSSRRTGRWKKLWGSAEEDEDKL
PLVLEEAKQHSIMSAELCKGLHGREGILGKICLAMWESGQKRHSPLVVHGAAGMGKTALL
CKVVQEVQRVLEARVVLVIRFLAACHPQRPDLDQVLHSACLQVSSACGLAPPTPMTASSP
TEMQQFFRNILEEASQQGCTLLIVFDALEQLAEQNHTHKLHWVPTNLPPKVHLLVSMDTC
SEAFVNMRLKTDSLENFFEVERLSGDEGEHIMESHLRASQRTLTPEQKDVVLQNFTPTGC
PLHLKLILSAVQNWTSFTPLTEQLLGANTEEVMSQLLHRLEHKHGKELVGGALGYIALAR
EGLLEAELYDVMSLDDDVISEVYRYTHPPTPSLIRLPPLLWARLKRDLKDHLEERWTNGV
VVIAFSSRNDLMLLIRRLSEVVLGHYLTSERQGRCHKILGEYFLGRWSGKLKPVALPGLS
LLLSDRKVPPQPLWFAPGLANIRKLQALPYHLLHAGLWEELRQEVINGPQIVFLTSLWLL
LTLVSCHSFCFHTHVRDSSLSLWCCVSAGSAEWLFCKSRVCGVSSVIRDLDQGSKYMDCT
ETGLIRDALALIKPGLDFLDGHVGKSQFYGELLARLSALSIVFPSLIGRLCSQINDWFLT
CPEPALIPKCSFLQQPGGALQHTLNTTNAGVLCVDASAALQMLAAGAEDGGVAIWSLEDQ
QLLHVLLGHSAAVLTVKLESGAPSCLSVSADGSLRRWSLKNGQQLLCIQEAVPLDSTPSS
VQLHLSEELLFVHTRTQVRCGRSRFSRAAAGQSSLLFFSSLDDSQLFQFRRNEHQLSELT
AAGSSQVKVWGLDGAELQLCSSQEEVTVVLGLLGESVVSLCDSSWVQISHPVDKTQSTKA
QLEPSGRRVTVVTSVTSPRRGKVLVVSEEGHLYQICRDSKLSAVEFPLRPSLILVAEDEK
ILVTGCERTLSLFSIDGDSADRILELQHDDTILSACLSKDSRQLVSGAADQLIRVWSVTT
GALLDFFCGSDASVTSLLFFRDFVVSASSTKSAIHLWSLKYDCRLKHPAHIPAGSAHAAL
TRDGNQIFYIHHQSQREVVRWNSQTGSLEERLAVSAEVSCLELAQHKRLLLCGLTSGTVL
IYPLNLPQETLCIPPPESLSGVLCLAVSSQEKNVAVAYEDSVSLFEMATRDSFPTVEGPL
RRFPMSLLHAPLSCMALLADRRLLYGTSCGGVRLQGFSGTISELEPHGSKVTCVTASNWG
SHALVGSQDGVQRLWALNPPSLDHTMEHKGFFFHGVISAAFSESDQFVFTGSQDRTIKVW
DVASGKLLFVQYVYSPVVRMVTFRNGFAALTQQGSVIREAFRCPDHVSPDYNPLRSIRGQ
YRLTSRDKNRDARRTSVSDLQHFNPAQFKLSLMGPLRAEPSSACVLL
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggaagatcaaccggctgcagaagacatcaggctggggggagccccaacaggacaggca
gacagagctcagaagatgaacagcaacatgatccgagtcttcctcagctcaggaatcaca
gatatgagcagcgagaggaaagccctgctggagaaagcttttccagaagtcctgctcttc
tgccgtggactgggactggtctttgaggtggtggatctgcactgggggattaggaatgac
ccgtttggagaccacaaggcctgtgagatatctcttcaggagatccagatgtgcaaaagg
ctgtcagctggacccaatttcattgcgctactggggaacaggtacggccatcgagctctt
cctcgacttatcccggaaaaacagtttgaagtgtatttgtccaaactctccaatacccct
gggggaatcaagcagctgcaacagtggttcagaaaggacacaaatgctctcccgcccacc
tacgtcctgcagccaatcacagcttacttcccttattactgtgacctacgacctgaaagt
gagcagcagcacaaccgggatgttgattcatggcgtttaacagagactcagttgctgcag
cttcttcgttcggctgcatcagaagctgaagctgcaggagagatcccagctgagctgaaa
cggagcttctacacttcagtcactgagcaagagttggagcagggtttatggattggaggc
aaccctgcaaacgcactgctgttcctcagagaacagaaggtaaaggagcggcccaaacga
ctcgccaagttcatggatgccactgccaacgggctgctggaccctgaggctcagaaactc
ctgacagagttgaagtcacagctgtctgctacctcacaaaacagccttaaccttcactgt
gtggagctcagcagaggaaccattgacccaaagcgtaaagagcacgctcagtacctggac
atcctgtgccagcagtttgtctctcagatgaaagccaggattgaagtcgcggtgagttca
aggaggacaggaaggtggaagaagttatgggggagtgctgaggaggatgaggacaaatta
cctttggtgcttgaagaggcaaagcagcacagcatcatgagtgctgaactatgtaaagga
ctgcatggtagagaaggaattctgggaaagatttgccttgccatgtgggagtccggccaa
aaacgccacagcccactggtggttcatggagctgctgggatggggaaaactgctttgctt
tgcaaagtcgtgcaagaggtgcaacgggtcctggaggccagggtggtgctggtgatcagg
tttctagcagcatgtcatccacagagacctgacttagaccaagtcctccatagtgcttgc
ctgcaggtgagttccgcatgtggtctggctccacccacacccatgacagcgagcagtcct
acagagatgcaacaattcttcaggaacatcctggaggaggcctctcagcagggttgtact
ctgctcattgtctttgatgctcttgagcagcttgcagaacagaatcacacccacaaactg
cactgggtacctaccaacctcccacccaaagtccacctgctggtctccatggatacctgt
agtgaggcgtttgtgaacatgcgattgaaaacagactctctagagaatttctttgaggtg
gaacgtttgtctggagatgagggggaacacatcatggagtcacatctgcgagcctcacag
cgaacgctgacccccgagcagaaagacgtggtgctgcagaactttactccaactggctgt
ccacttcaccttaaactgatcctgtctgctgtccagaactggacatccttcaccccattg
accgagcagctgttgggagccaacacagaggaagtgatgtcacagctgctgcacagactg
gagcacaaacacgggaaggagctggtgggcggagctttgggatacattgccttagcaagg
gaaggcctgctggaagccgagctgtacgatgtcatgtctttggacgacgatgtcatcagt
gaggtatacaggtacacccatcctcccactccttcgctgattaggcttccacccctcctc
tgggcccgactcaaacgggatctcaaggaccacctggaggaacgttggaccaacggagtt
gttgtgatcgctttcagcagccgtaatgatctgatgcttctcattagacgtctttctgag
gtggttttaggccactatctgacatcagaaagacaggggagatgccacaagattctaggg
gagtactttctcggtcgatggtcggggaagctcaagccggtggcgttgccaggtctatcc
ctgctgctgtctgacagaaaggtcccgccccagccattgtggtttgcccctggattggct
aacatacggaagcttcaggcacttccctatcacttgctgcatgctggtctgtgggaggag
ctacgacaggaagtcataaatgggccacagatagtcttcctcacatctctttggttgttg
ctgacactcgtctcctgtcactccttctgcttccatactcacgtcagggattccagtctg
agcctgtggtgctgtgtgtctgcaggcagtgctgaatggctgttctgtaagagcagagtg
tgcggtgtctccagtgtgatccgtgacctggaccagggctccaagtacatggactgcaca
gaaaccggcctgatcagagacgctctggccttgattaagccgggtctggacttccttgat
ggccatgttggcaagtctcagttttacggcgagctcttggcccgactctccgccctgtcc
atagttttcccctctctcattggtcggctctgcagtcagatcaacgactggttcctgaca
tgtccagagccagctcttatcccgaaatgcagcttcctgcagcaaccagggggggcgctg
cagcacactctgaacaccaccaatgcaggcgtgctttgtgtggatgccagcgccgctctg
cagatgctggctgcaggtgctgaagatggaggggtggcgatctggagcctcgaggaccag
cagctgctgcacgttctactgggacactcggctgcagttctgaccgtgaagctggagtct
ggcgccccctcctgtctctccgtgtccgctgacggctctctgaggaggtggagcctgaaa
aacggccaacagctgctctgcatccaggaggcggtgcctctagactccaccccctcatcg
gttcagctgcacctgtcagaagagctgctgtttgttcacaccaggacacaggtgcgttgt
gggaggagccgtttctctcgtgctgcagctggacagtccagccttttgtttttcagcagc
ttggatgattctcagctttttcagttcaggagaaatgagcatcagctttcagagctgaca
gctgcgggttcctcgcaggtgaaggtgtgggggctggatggagccgagctccagctctgc
agcagccaagaagaggtcactgtggttctggggcttctgggagaatctgtggtgtccctg
tgcgactccagctgggtccagatttctcatccggttgacaagactcagagcacaaaggct
caactggagccgtcggggaggagagtgactgtggtgacgtctgtgacgtccccccggcgg
gggaaagtgttggtggtctctgaggaaggtcacctctatcagatctgcagggacagcaaa
ctctcagctgtggagtttcctctgcgtccatctttgattttagttgctgaggatgaaaag
attctggtgacaggctgtgagcgcactctgagcctctttagcattgatggcgactcagca
gatcgaatcctcgagctgcagcacgacgacaccatcctgtccgcctgcctgtccaaagac
agccggcagctcgtctccggagctgcagaccagctgatcagagtctggtcggtgaccaca
ggggcactgttggacttcttctgtggttccgacgcttccgtcacctcgctgctgttcttc
agagactttgttgtttctgcatcatccaccaagtctgcaatccacctgtggagtctgaaa
tatgactgcagactcaaacaccccgcccacatccctgctggctccgcccacgctgccctc
accagagatggcaaccagatcttctacatccaccatcagagccagagagaggtcgtgaga
tggaacagtcaaacaggttctctggaggagcgtctggccgtctctgcggaggtttcctgt
ctggagctggctcagcacaaacgtctgctcctctgcggtttgaccagcggcaccgtcctc
atctacccgctgaacctcccccaggagacgctctgcatcccccctccagagagcctgtcg
ggggtgctctgcctggccgtgagctctcaggagaagaacgtggcggtggcttatgaggat
tcggtttccctgtttgagatggccaccagggacagcttccccacagtggaggggcctctg
aggaggttccccatgtcgctcctgcatgcccccctgtcctgcatggctctgctggccgac
cggaggctgctgtacgggactagctgtgggggggtgaggctgcagggttttagcggcacc
atttctgagctggagcctcatggaagcaaagtgacttgtgtgacggccagcaactggggg
tcccacgctctggtgggctcccaggacggtgtgcagagactgtgggccctgaacccgcca
tccctggaccacaccatggagcacaagggtttcttcttccacggcgtgatctctgccgcc
ttctccgagagcgaccagttcgtctttacaggatctcaagacagaaccattaaagtctgg
gacgtggcgtccgggaagctgctgttcgttcagtacgtgtactcacccgtcgtccggatg
gtgaccttcaggaacggctttgccgccttgacccagcagggttctgtcatcagggaggcg
ttccgctgtccggaccacgtcagcccagactacaaccccctgaggagcatcagaggtcag
taccggctcacctcaagggacaagaaccgggatgcccggagaacctctgtgtccgacctc
cagcacttcaacccagcccagttcaagctgagcctgatgggcccgctcagagcagaaccc
tcctccgcctgtgtcctcctgtag
DBGET
integrated database retrieval system
