Oryzias melastigma (Indian medaka): 112136783
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Entry
112136783 CDS
T07439
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112136783 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
oml04091
]
112136783 (frem1b)
Lectins [BR:
oml04091
]
C-Type lectins
Lecticans
112136783 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Calx-beta
Cadherin_5
Motif
Other DBs
NCBI-GeneID:
112136783
NCBI-ProteinID:
XP_024114445
LinkDB
All DBs
Position
LG4:complement(5176492..5236751)
Genome browser
AA seq
2141 aa
AA seq
DB search
MEAVSPSLLLLLLTIMAAVCARSLVLVNSGVQVPRGRMVFITNSELSIVADADADCKVEV
VLNEPVTQRVGKLSPQVFDCNFLEDEVKYVHNGSPLLDEDTVMLRVYSFRSVDTQMEVVI
FRVQVVETRSGLVILGSTPLVVPQFLGLSNPINSSVLTIKAAADRICTVRLMISDTSVPS
AGQLVREDNAPQRKGRQVALCPGNKPCLHDTETLRHLKTSCQDFLSLGLKYQHLSPPTPQ
IDYVSFRVELREQATRALLESEAVWLPVLIHGAMQNQPPKAGFMASFILEVDQFILTPFT
TAALDAEDHESPQDKLVFNVTVPPGEGYITHLDDHTRPIHSFSWLDLHHLKVAYQPPNNT
SPHRRDFEVEFQAIDSSFLRSPPMLVHISIRPSETSAPRVSWNLGLDLLEGQSRPITWEE
LQIVDSDNINAVFLVAVDGPQHGRLSVRGGKAFMFQVRDLKEGVVVYHHSDSDTTHDHIV
FRISDGRHSIRHKFPINILPKDDSPPFLINNVAVEVQEGGAVRLEEFMLLASDLDSSDDH
ILFQVVAPPQAGQLIRRISTLENAVPVDHFLQRDLTQGQIFYQHSGEETFLDSFDFTLAD
SHQPPHLSQTYTMVVHIFPVKDQLPVEVPGSVRSLTVKETEVVFITQAHLHFTDSEDPEA
DLTFIITQPCFSPTRPEMMDAGRLIYSDSTNAMKKDNMVPGLKSFTQHAVGHMKVAFMPP
VEDIGVDPLFVQFVFSVTDQHGGTISGLTFNITVTPVDNQKPEAFTNLLQVEEGGATFVT
EEHLLVQDRDSREETLRVEVQNTALHGQLELQGRVLLKGDGFSLQDLRGLRLRYVHDDSE
TTEDEVGLKVTDGVNFAEVVLHIQVQPINDEPPQLGWGLHRELTCKEGGRIQLTVDYLSA
TDRDSDDSRLTYMLARTPNRGELQRDGLAVDKFSQQDLLQGHVYYLHSGGEIGPDPVTDI
VTLIISDGEAGLKEGCCHGDPPPPPVPLHGTLPVYDLNITILPVNNKVPIITLGENLLVV
DEGSYVCLCGGVLGASDPDSPPEQLTFHLETPPLYGFIENTLPSDGSEKSNAGVPVESFS
LSHLTSGFINYVQSEHKGVEPTVDQLSISVTDRVHTSAPVLFYIIISPTNDETPSLMFAN
FTVKEGGLRELTPSILDGFDLDAPPDVLTFTVERGPAHGSLTSSIHGSDISHYQQMGKEL
MQRSLHLSSFTLQELRQGMKLLYMHDDTETLEDTVVLRLTDGIHTVEGTAQVTVMPVNDN
KPRLLKNAGLDVNFGELRVISSLTLEVEDLDTPPDQVLFILNTEPRFGDLLLKTELGWVK
LSAGQNFSQDDVEMNRLWYKHGAGVGADFRGRDSFRFTLSDLDNQAPTQTFFISIHRVHK
GEIVLRSEPVYLQEGQRVVLNTDILLASDSAGRPDELIFKVLVPPQHGLVHGVQHPGVPL
TSFTQLDVAAHRVCYTHDNSHDGEADSFSFVVTNGDSSRSSALVFSIQRSDRIPPTLQRN
SGLRLREGSTAAINSQHLQLTDPDTTAANLSYVVTQLPRYGDLLLRGTPLTSSPPRFYQR
DVDEMNLAYRHNPSSPAEIDRFHFLPGDGSNRGYLEFGQLREEPAVFHIQVDRVDRTPPS
LTIRQSPSSVVEVRDGRSGIFITSRHLQASDPGSSAEQLQFFISRPPRHGYLENAITGAF
IRSRFTQRDVDQRALLFIVPADVEVTSDSFEVQLSDAAGNSAPPQVLELFWSRVELSASC
YRTCELAGTLQIQVQRSGRSFDPAYVAIQVEEGSAKPGRDFTHSSAALIQFDPGVNLKTW
NIFLINDGLEENHETFTVFLKNPQNAVLGQTTSATVEIIDPRRGRCNPEDTEVDKDRRPP
TPHLPDPSPPDLKEEEDPVIEVETEMLWEGDLFPARGDVPDRHPLLDSEVEPQDQAAPSY
RTTPHHKDRQIADGGAHRLMQGGQKVLPSAQRRSEDRVWTIQSLTPLQLGGPLLGGAEGR
WSLHSGLQQDQQAADAPGTDRPAAGQQLELHQNKTSSSSCPEGWTLYRGRCYSVSSSVAS
WASADRTCSLLFNSSLSGAQSRRDVSWLWRLVGRRPFWMGLHEGLAQWNQADSHPSFRLT
GAHSEDGDGPNCMLVKNPRSWVSTSCSADIQHPFICSSPAS
NT seq
6426 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcagcccttctctgctgctgctgctgctaaccatcatggcagcagtctgt
gctcgctccctggtcttggtaaactctggagttcaggtgcccagaggccgcatggttttc
attacaaactctgagctgagcatcgtcgccgacgcggatgccgactgcaaagtggaagtg
gtgctgaacgaaccggtgactcagagagtggggaagctgagtccacaggtgtttgactgc
aacttcctggaggatgaagtgaagtacgtccacaacggcagtcctctgctggacgaggac
acggtgatgctgagagtctacagcttcaggtctgtggatactcagatggaggtggtgatc
ttcagggtccaggtggtggagacccggtctggtcttgtgattctgggcagcacgccactc
gtggttcctcagttcttgggcttatctaaccccatcaacagctctgtgttgaccatcaag
gctgctgccgaccgcatctgcactgtcaggttaatgatcagcgacaccagcgtcccgtcg
gcaggtcaactggtcagggaggacaacgcccctcagaggaaaggtcgacaggtggcgctg
tgtcctggaaacaaaccctgtcttcatgacacagagacactccgtcacctaaaaaccagc
tgccaggacttcttaagcctgggtctgaagtaccaacacctcagtcctccgaccccacag
atcgactacgtttccttcagagtggagctgcgagagcaggctaccagggctctgctggag
tcggaagcagtgtggctgccagttctgatccacggtgcgatgcagaaccaaccccccaaa
gccggattcatggcttccttcatcctggaggtggaccagtttatcctgactccgttcacc
accgcagctttggacgccgaggaccacgagtcaccgcaggacaagctggtcttcaacgtg
acggtcccaccaggggagggctacatcacccacctggatgaccacacccgacccattcac
tcctttagctggttggacctccaccacctgaaggtggcataccagccacccaacaacacc
tccccccaccgccgggactttgaggtggagtttcaggcgatagactcctccttccttcgc
agtccacccatgctggtgcacatctccattaggccatcagaaaccagcgcccccagggtg
tcctggaacctgggtctggacctgctggagggtcagtcccggccaatcacgtgggaggag
ctgcagatcgtggacagcgacaacatcaatgcggtgttcctggtggcggtggatggccct
cagcacggacggctcagtgtgaggggaggaaaggcgttcatgtttcaagtacgagacctg
aaagagggtgtggtcgtctaccaccactctgacagcgacaccacccacgaccacatcgtg
ttccgcatcagcgatggccgccacagcatccgacacaagttccccatcaacatcctcccg
aaggacgactctccgcctttcctcatcaacaacgtggcagtggaggtgcaggagggcgga
gccgtgcggctcgaggagttcatgcttctcgcctcagacctcgactccagcgatgaccac
atcctgttccaggtcgtcgccccacctcaggcggggcagctgatcaggagaatctccact
ctagagaacgccgtaccagtggatcatttcctgcagagggacctgacccaaggtcagatc
ttctaccagcactcaggagaggagacatttctggattcctttgacttcactctggctgac
agtcaccagccgccacacctttctcagacatataccatggtggtccacatcttccctgtg
aaggaccagctgccagtggaggttcctggcagcgtccgctcacttacagttaaggagaca
gaggtcgtcttcatcacgcaggctcacctccacttcacagactcagaggacccagaggca
gacctcaccttcatcatcacacagccgtgcttcagcccaacgcgtcctgagatgatggac
gcaggtcgtctgatctacagcgacagcaccaacgccatgaagaaagacaacatggtgcca
ggcctgaagtccttcacacagcatgcagtgggccacatgaaagtggccttcatgcctccc
gtggaggacatcggtgtcgacccgctctttgtccagtttgtcttttctgtgaccgaccag
cacggtggcaccatctccgggctcaccttcaacattaccgtcacccccgtggacaaccag
aaaccggaggctttcaccaacttgctgcaggtggaggaggggggagccacctttgtgaca
gaggagcacctgctggtccaggaccgggacagccgggaggagaccctgagggtggaggtc
cagaacaccgctcttcatggtcaactggagctccagggtcgtgttctgctgaagggagat
gggttcagtctgcaggatctgagaggtctgcgcctcaggtacgtccatgatgactcggag
accactgaggatgaggtgggtctgaaagtgacagacggcgtgaacttcgcagaggtcgtc
ctgcacattcaggtccaacccataaacgatgagcctcctcagctggggtggggtcttcac
cgggagctcacctgtaaggaggggggccggatccagctgactgtggactacctgtccgcc
acagaccgcgacagcgacgactccaggctgacctacatgctggcccggacccccaacaga
ggagagctgcagagagacggactcgccgtggacaagttctcccagcaggacctgctacag
ggacacgtctactacctgcactcaggaggagagatcggtccagatcccgtgaccgacatc
gtcaccctcatcatctctgatggcgaggctggcctgaaagaaggctgttgccatggagat
cccccacccccacctgtcccactccacgggacgcttcctgtgtatgacctcaacatcaca
attctaccggtcaacaacaaggttcccatcatcactctgggtgagaacctgctggtggtg
gatgaaggctcctacgtttgtctctgtggaggagttttgggagcgtcagacccagacagc
ccccccgagcagctcacatttcatctggagactccgcccctctatggcttcatagaaaac
acgctgccatcagacggctcagagaaaagcaacgcaggagtgccagtggaatccttcagt
ctctcccacctgacctctggcttcatcaactatgtccaatctgagcacaaaggggtggag
ccaactgttgaccagctgtccatcagtgtgactgaccgtgtgcacacctctgctccggtc
ctcttttacatcatcatcagtccaaccaatgatgagactccttctctgatgtttgctaac
tttaccgtcaaggagggcgggttgagggagctgacgccctccatactggatggatttgac
ctggatgcccctccagatgtgctgaccttcacagtggagcgggggccggctcacggcagc
ctgaccagcagcatccacggttcagatatcagccactaccagcagatggggaaggagctt
atgcagaggagtctccacctgtcctccttcactctgcaggagctccgacaaggcatgaag
ctcttgtacatgcacgatgacacggaaaccctggaggacaccgtggtgctacggctgaca
gatggcatccatacagtagaggggacggctcaggtcaccgtgatgccggtcaacgacaac
aaaccacgactgctcaagaatgcaggtctggatgtgaactttggtgaactcagagtcatc
tccagtttgactctagaggtcgaggacttggacacgccccctgaccaggtcctcttcatc
ctgaatactgagcccagatttggagatttgctgcttaagacagagttgggttgggtcaaa
ctctcagcgggtcagaacttctctcaggacgacgtggagatgaaccgtctgtggtacaaa
cacggcgctggcgttggcgctgatttcagaggtcgcgacagcttccgcttcactctcagc
gacttggacaaccaggcgccgactcagaccttcttcatctccatccacagggtccacaaa
ggtgagattgtgctgcggagtgagccggtgtacctgcaggaagggcagcgagtcgtccta
aacaccgacatactgctggcgtctgactcagcgggccgacctgatgagctgatcttcaag
gtgttggtcccgcctcaacacggtctagttcacggcgttcagcatccgggagtgccgctg
accagcttcacccagctggatgtggctgcacaccgagtgtgctacacccacgacaacagt
catgacggcgaggccgactcattcagttttgtcgtcaccaacggagactcatcccgcagc
agtgccctcgtcttcagcatccagcgcagcgaccgcatcccccccaccctgcagcgcaac
agcggcctccggctgcgggaaggctccactgcagccattaacagccagcacctgcagctc
accgaccctgataccaccgccgccaacctgagctacgtggtcacccagctgccccggtac
ggtgatctgctgctgagaggaacccccctgacgtcctcgccgccgcgcttctatcagagg
gacgtggacgaaatgaacctggcttaccggcacaacccgagcagcccagcagagatcgac
aggttccacttcctgcctggagacggaagtaaccgagggtacctggagtttggacagctg
agggaggagcctgctgtgttccacatccaggtggatcgcgtggaccggacccctcccagc
ctgaccatcaggcagagccccagcagtgtggtggaggtgagagacggtcgttccggcatc
ttcatcaccagcagacacctgcaggcctctgatccaggcagctcagcggagcagctccag
ttcttcatcagtagacctccacgccacggatacctggaaaacgccatcacaggagcgttc
atcaggagccgcttcacgcagcgggacgtggaccagcgagctctgctcttcatcgtccct
gcagacgtggaagtgacgagcgacagctttgaggtccagctgagcgatgcggcaggaaac
agcgctccgccgcaggtactggagctgttctggtctcgggtggagctgtcagcaagctgc
tacagaacatgtgagctagcaggaactcttcagatccaggtccagcgcagtgggaggagc
ttcgacccagcatatgtcgccatccaggtggaggaaggatcagccaaaccaggcagagac
ttcactcacagctccgccgctctgattcagtttgatccaggcgtcaacttaaaaacctgg
aacattttcctgatcaacgacggtctggaagagaaccacgagaccttcaccgtcttcctg
aagaatcctcaaaacgctgttctaggacagacaacatctgccactgtggagatcatcgac
cccagacgaggaaggtgcaatccagaagacacagaggtggacaaggaccggcgacctcct
actcctcatcttcctgaccccagcccacctgacctaaaagaggaggaggaccccgtcatc
gaggtggagacagagatgctgtgggagggggatcttttcccggccagaggggacgtcccg
gaccgccaccccctcctggactctgaggtggagcctcaagaccaggcggctcccagttac
agaacaaccccccaccacaaggatcgccagatagcagacgggggtgctcaccgtctgatg
cagggaggtcagaaggtgctgccgtctgctcagaggcgatctgaagacagagtctggacg
atccagagtctgactcctctccagctcggggggccgctgttgggaggagcagaggggaga
tggtcacttcacagtggcctccagcaggaccaacaagctgcagacgctcctggaacggat
cgtccagcagccggacaacagctggagctgcaccagaacaagacatccagcagctcctgt
cctgagggttggacgctctacagggggcgctgttactccgtcagctcgtctgtggcgagc
tgggccagtgccgacagaacctgctctttgctcttcaacagcagcctgagcggcgctcag
tccaggagagacgtgtcctggctgtggaggttggtagggaggaggcctttctggatgggt
ttacatgaaggtctggcccaatggaaccaggctgacagtcacccctccttcaggctgacg
ggggctcactctgaggatggtgatggtcccaactgcatgctggtcaaaaaccccaggagt
tgggtttctactagctgctctgctgacattcagcatccgttcatctgttcatcaccagcg
tcatga
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