Oryzias melastigma (Indian medaka): 112136900
Help
Entry
112136900 CDS
T07439
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oml01009
]
112136900 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112136900 (sh3rf1)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112136900 (sh3rf1)
Protein phosphatases and associated proteins [BR:
oml01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112136900 (sh3rf1)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112136900 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-RING_4
zf-C3HC4_4
zf-RING_11
zf-Nse
zf-rbx1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
112136900
NCBI-ProteinID:
XP_024114670
Ensembl:
ENSOMEG00000016279
LinkDB
All DBs
Position
LG4:31157742..31208681
Genome browser
AA seq
852 aa
AA seq
DB search
MDESVLLDLLECPVCLERLDASAKVLPCQHTFCRRCLQGILGSRGELRCPECRTLVECAV
DDLPSNILLVRLLDGIKQRPRKAGSVPAVCTNGTPGAVARAPATGTKDQNAAGAQTQRAQ
AKSTVVRGVPQLPCAKALYNYDGKEPGDLKFSKGDIIILRRQVDENWYHGEMGGVHGFFP
TNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDENWAEGMLGD
KIGIFPISYVEFNSAARQLIESDKPADPSGDGGEGASSAPQSNGAQRAGEKKNTKKRHSF
TSLTMSHKPMLAPPPQRHSMEISGPVLISSSNPTAAARIGEISGGLSCSAPSQVHICTTG
LIVTPPPSSPVTTATVFTFPSETSYTSIPLDGLPPPPPPPPQSSVSGAAFSLAAGQRPSP
STSDQSGRQRPTVYVAMFPYTPRKEDEVELRKGEMFLVLERCQDGWFKGTSMHTGKIGVF
PGNYMSPVSRASGSTKVPMSLCTQAGRGVTILSPSSAPLGAAAPGTDFNQTPPVCSSAVP
ASAHPAAVVTAAQTATGQQPKVPLHVSPQMTVNQARSAVRTAACHSQDRPTAAVPPVQAA
APVSFLPHLVVCQQSSSSPAQGCARAAVAMGCAAASLTPPNVSATCLEGEALRPVPVLAV
PVCPGSGAAVSASFSAAALACRAEKDVKREKKSLLKLLSSNKKRSRPSPPSSPTLESEQA
AAGELLHGAAGADTSPPSGSGGCPEPEPAAPSSSSHPGLDSSQRKSGPLDAPIAPPPRQP
CSSLSQQHDTRPIICERYRVVVSYPPQSEAELELKEGDIVFVHRKREDGWFKGTLQRNGR
TGLFPGSFVDVM
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtccgtgttgctggatttgcttgagtgccccgtttgtctggagcggctcgac
gcctccgccaaggttctgccctgtcagcacaccttctgccgaagatgtctccagggcatc
ctgggttcacgcggcgagctccgctgtccggagtgcaggacgctggtggagtgtgcggtg
gatgacctgccgagcaacatcctgcttgtgcgcctgttggacggcatcaagcagaggccg
cggaaagccggctccgtgcctgcagtctgcaccaacggtacacctggagccgtggccaga
gcacctgcgactgggaccaaggaccagaacgccgcaggagcgcagactcagcgagctcag
gctaagagcacagttgtccggggtgtaccgcagctcccttgtgccaaagccctctataac
tatgatgggaaggaacctggagacctcaaattcagcaagggtgacatcatcatcctgcga
cgacaagtcgatgaaaactggtaccacggagagatgggcggagtgcatggatttttcccc
accaactttgtccaggtcatcaagcctctgccgcagccgccgccccagtgcaaagctctg
tacgactttgagctgaaagacaaagaggccgacaaagactgtctgccattctctaaggat
gatatcttgaccgtcatccgcagagtagatgaaaactgggcagagggaatgctgggagat
aaaattggaatttttcccatctcatatgtggagttcaactcagcagcacgtcagctcata
gagtcggacaaaccggcagaccccagtggagacggtggtgagggggcctcctcagcaccc
cagagcaacggtgcccagcgagcaggagagaagaagaacaccaagaaacgccattccttt
acctccctcaccatgtcccacaagcccatgctagctcctccccctcaacgccactccatg
gaaatcagtgggccggtcctgatcagctccagcaacccaacagcggctgctcggattgga
gaaatcagcggggggctttcctgcagcgcaccttcacaagtacatatttgcacaactgga
ctaattgtaaccccgccccctagcagtcctgttaccacagcaacggtcttcacatttccg
tcagagacaagctacacgtccattcctttggacggcctcccaccacccccacctcctccc
ccgcagtcctccgttagcggggcggcgttctcgctggccgccgggcagagaccctccccc
agtacaagtgaccaaagcgggagacaaagacccacagtctatgtggccatgttcccatac
actccccgcaaggaggatgaggtggagctgaggaaaggagagatgtttctggtgctggag
cgctgtcaggacggctggttcaagggcacctccatgcacacgggcaagatcggcgtcttt
cctgggaactacatgagccccgtcagcagggcgtctgggagcaccaaagttcccatgagt
ctgtgcacgcaggctggcagaggagtcaccatcctcagcccctcctccgctcccctcggc
gccgcagctccagggactgacttcaaccaaaccccccctgtgtgttctagcgcggtacct
gccagcgcccatcctgcagctgtggtaacagcagctcagacagccacaggccagcagcca
aaagtcccgctgcacgtcagcccgcagatgactgtaaatcaggcccgcagtgctgtccgg
acagctgcttgtcacagccaggaccgccccacggcggcggtgccgcctgtgcaggctgca
gccccggtctccttcctcccacacctggtagtgtgtcagcagtcctcctccagtccagct
cagggctgcgcccgggcggcggtggccatgggctgcgcggcagcctctctgaccccgccc
aatgtgagcgccacgtgtctggagggggaagcgctgagacccgtgcctgtccttgccgtg
cctgtttgccctggaagcggcgccgccgtcagcgcctccttcagcgccgcagctctggcc
tgcagagcagagaaggacgtgaagagggaaaagaaaagtcttctgaagctgttgtcctcc
aacaagaagaggtcccgcccctctcccccctcctcccccaccctggagtcggagcaggcc
gctgcaggagagctgctgcacggggccgcgggcgccgacacctccccgccctcgggctct
ggaggctgccctgagccagaacctgctgctccatcctcctcctctcatccaggcctggac
tcctcccagcggaagagcggtcctctggatgcccccatcgctccgccccctcgccagccg
tgctcctccctgtcccagcagcacgacacacgccccatcatatgtgagaggtacagggtg
gtggtttcctatcctcctcagagcgaggccgagctggaactcaaggaaggcgacatcgtg
ttcgtccacaggaagagggaggacggctggttcaaaggcacgctgcagaggaacggcagg
accgggctgttccccggcagcttcgtggacgtgatgtga
DBGET
integrated database retrieval system
